miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9008 3' -59.3 NC_002512.2 + 6819 0.66 0.872267
Target:  5'- -cCGGGuCUcgGCCACGGUGGcgACCAg -3'
miRNA:   3'- caGCCCcGA--UGGUGCCACCagUGGUg -5'
9008 3' -59.3 NC_002512.2 + 100495 0.66 0.872267
Target:  5'- cUUGGGGagGCCGCGGUcGUCGagcacCCGCa -3'
miRNA:   3'- cAGCCCCgaUGGUGCCAcCAGU-----GGUG- -5'
9008 3' -59.3 NC_002512.2 + 206865 0.66 0.865193
Target:  5'- uUCgGGGGCggcGCCgagcucgccgACGGguaGGUCACCAg -3'
miRNA:   3'- cAG-CCCCGa--UGG----------UGCCa--CCAGUGGUg -5'
9008 3' -59.3 NC_002512.2 + 137051 0.66 0.857928
Target:  5'- -cCGGGGacgGCCAgGGaGGaggCGCCGCg -3'
miRNA:   3'- caGCCCCga-UGGUgCCaCCa--GUGGUG- -5'
9008 3' -59.3 NC_002512.2 + 173809 0.66 0.857928
Target:  5'- -cUGGGGCUcCUGCGuGcgGGUCugCACc -3'
miRNA:   3'- caGCCCCGAuGGUGC-Ca-CCAGugGUG- -5'
9008 3' -59.3 NC_002512.2 + 87843 0.66 0.857928
Target:  5'- cGUC-GGGCccUCGCGGcgGGUCGCCGg -3'
miRNA:   3'- -CAGcCCCGauGGUGCCa-CCAGUGGUg -5'
9008 3' -59.3 NC_002512.2 + 124356 0.66 0.850478
Target:  5'- aGUCGGccgggcaguucGGCUGCCACGGc-GUcCugCGCg -3'
miRNA:   3'- -CAGCC-----------CCGAUGGUGCCacCA-GugGUG- -5'
9008 3' -59.3 NC_002512.2 + 34542 0.66 0.850478
Target:  5'- -cCGGGGUU-CC-CGGcgccgGGUCACgCACa -3'
miRNA:   3'- caGCCCCGAuGGuGCCa----CCAGUG-GUG- -5'
9008 3' -59.3 NC_002512.2 + 28074 0.66 0.842847
Target:  5'- -cCGGGcGCggcggagACgGCGGagaGGUCGCCGCc -3'
miRNA:   3'- caGCCC-CGa------UGgUGCCa--CCAGUGGUG- -5'
9008 3' -59.3 NC_002512.2 + 127166 0.66 0.842847
Target:  5'- -cCGGGaCUGCCGCGa-GGcCGCCACu -3'
miRNA:   3'- caGCCCcGAUGGUGCcaCCaGUGGUG- -5'
9008 3' -59.3 NC_002512.2 + 88111 0.66 0.842847
Target:  5'- -gCGGGGCUgAUCACGGUcagGGUCGacucgucguaCGCg -3'
miRNA:   3'- caGCCCCGA-UGGUGCCA---CCAGUg---------GUG- -5'
9008 3' -59.3 NC_002512.2 + 152239 0.66 0.842846
Target:  5'- uUgGGGGgaGCCcacAgGGUGGUCAUgACg -3'
miRNA:   3'- cAgCCCCgaUGG---UgCCACCAGUGgUG- -5'
9008 3' -59.3 NC_002512.2 + 152008 0.66 0.842846
Target:  5'- uUgGGGGgaGCCcacAgGGUGGUCAUgACg -3'
miRNA:   3'- cAgCCCCgaUGG---UgCCACCAGUGgUG- -5'
9008 3' -59.3 NC_002512.2 + 151930 0.66 0.842846
Target:  5'- uUgGGGGgaGCCcacAgGGUGGUCAUgACg -3'
miRNA:   3'- cAgCCCCgaUGG---UgCCACCAGUGgUG- -5'
9008 3' -59.3 NC_002512.2 + 151852 0.66 0.842846
Target:  5'- uUgGGGGgaGCCcacAgGGUGGUCAUgACg -3'
miRNA:   3'- cAgCCCCgaUGG---UgCCACCAGUGgUG- -5'
9008 3' -59.3 NC_002512.2 + 151774 0.66 0.842846
Target:  5'- uUgGGGGgaGCCcacAgGGUGGUCAUgACg -3'
miRNA:   3'- cAgCCCCgaUGG---UgCCACCAGUGgUG- -5'
9008 3' -59.3 NC_002512.2 + 59818 0.66 0.842846
Target:  5'- uUgGGGGgaGCCcacAgGGUGGUCAUgACg -3'
miRNA:   3'- cAgCCCCgaUGG---UgCCACCAGUGgUG- -5'
9008 3' -59.3 NC_002512.2 + 152319 0.66 0.842846
Target:  5'- uUgGGGGgaGCCcacAgGGUGGUCAUgACg -3'
miRNA:   3'- cAgCCCCgaUGG---UgCCACCAGUGgUG- -5'
9008 3' -59.3 NC_002512.2 + 159368 0.66 0.842846
Target:  5'- gGUCGGGGCgucCCAuuCGcG-GGUC-CCGCg -3'
miRNA:   3'- -CAGCCCCGau-GGU--GC-CaCCAGuGGUG- -5'
9008 3' -59.3 NC_002512.2 + 191325 0.66 0.834251
Target:  5'- gGUCGGGacGCgggUGCCguccgcgACGGggguaGGUCGCCGCg -3'
miRNA:   3'- -CAGCCC--CG---AUGG-------UGCCa----CCAGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.