miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9008 5' -55.6 NC_002512.2 + 113651 0.66 0.961779
Target:  5'- uAGUUG-GCGCgGCCGGCcgcgagGGUGCGCg -3'
miRNA:   3'- cUCAACaUGUGgUGGUCG------CCGUGCGa -5'
9008 5' -55.6 NC_002512.2 + 175886 0.66 0.961779
Target:  5'- -uGUUGUcCACguagcuCACCAGCGGC-UGCg -3'
miRNA:   3'- cuCAACAuGUG------GUGGUCGCCGuGCGa -5'
9008 5' -55.6 NC_002512.2 + 114993 0.66 0.961779
Target:  5'- aGAGggGgcugguggACACCuuccuCCAgacccugcuGCGGCACGCg -3'
miRNA:   3'- -CUCaaCa-------UGUGGu----GGU---------CGCCGUGCGa -5'
9008 5' -55.6 NC_002512.2 + 35912 0.66 0.961779
Target:  5'- aGAGcgcgGUcaggaGCCGCCGGCGGCcucuCGCg -3'
miRNA:   3'- -CUCaa--CAug---UGGUGGUCGCCGu---GCGa -5'
9008 5' -55.6 NC_002512.2 + 118973 0.66 0.961779
Target:  5'- cGGGagGUGCugCagaacuGCCuGCGGCugGCc -3'
miRNA:   3'- -CUCaaCAUGugG------UGGuCGCCGugCGa -5'
9008 5' -55.6 NC_002512.2 + 30498 0.66 0.961779
Target:  5'- ----gGUGCGCCACCGGUucgugaaggugaGGCAgcUGCUg -3'
miRNA:   3'- cucaaCAUGUGGUGGUCG------------CCGU--GCGA- -5'
9008 5' -55.6 NC_002512.2 + 203131 0.66 0.958248
Target:  5'- cGAGUcGUGgGCCAUcaccguggcguaCAGCGGCGCcgGCg -3'
miRNA:   3'- -CUCAaCAUgUGGUG------------GUCGCCGUG--CGa -5'
9008 5' -55.6 NC_002512.2 + 114301 0.66 0.956775
Target:  5'- --cUUGUACACCcggcgcaggugcuCCAGCGcCACGCUc -3'
miRNA:   3'- cucAACAUGUGGu------------GGUCGCcGUGCGA- -5'
9008 5' -55.6 NC_002512.2 + 12305 0.66 0.9545
Target:  5'- cGAGgcg-GCGCCGCCGGacCGGCuCGCc -3'
miRNA:   3'- -CUCaacaUGUGGUGGUC--GCCGuGCGa -5'
9008 5' -55.6 NC_002512.2 + 56261 0.66 0.9545
Target:  5'- -cGggGUuCGCCGCC-GCGGCggagGCGCUc -3'
miRNA:   3'- cuCaaCAuGUGGUGGuCGCCG----UGCGA- -5'
9008 5' -55.6 NC_002512.2 + 91605 0.66 0.9545
Target:  5'- aAGUggaUGUACACCugCAG-GGCcccCGCg -3'
miRNA:   3'- cUCA---ACAUGUGGugGUCgCCGu--GCGa -5'
9008 5' -55.6 NC_002512.2 + 177118 0.66 0.950531
Target:  5'- gGAGguccggGUGCGCCAgCAG-GGCccGCGCg -3'
miRNA:   3'- -CUCaa----CAUGUGGUgGUCgCCG--UGCGa -5'
9008 5' -55.6 NC_002512.2 + 194130 0.66 0.950531
Target:  5'- gGAGauc-ACGCaCGCCAGCGGCAUGa- -3'
miRNA:   3'- -CUCaacaUGUG-GUGGUCGCCGUGCga -5'
9008 5' -55.6 NC_002512.2 + 89338 0.66 0.950531
Target:  5'- aGAGcucGUGCACC-UCGGUGGC-CGCg -3'
miRNA:   3'- -CUCaa-CAUGUGGuGGUCGCCGuGCGa -5'
9008 5' -55.6 NC_002512.2 + 139263 0.66 0.941917
Target:  5'- cGGGUc--GCGCCGCC--CGGCGCGCg -3'
miRNA:   3'- -CUCAacaUGUGGUGGucGCCGUGCGa -5'
9008 5' -55.6 NC_002512.2 + 29728 0.66 0.941917
Target:  5'- ----cGUGuCGCCcuACCguGGCGGCGCGCg -3'
miRNA:   3'- cucaaCAU-GUGG--UGG--UCGCCGUGCGa -5'
9008 5' -55.6 NC_002512.2 + 117694 0.66 0.941917
Target:  5'- cGAGcugcgUGgcGCACCugCGGCGgGUGCGCa -3'
miRNA:   3'- -CUCa----ACa-UGUGGugGUCGC-CGUGCGa -5'
9008 5' -55.6 NC_002512.2 + 224157 0.66 0.940084
Target:  5'- aGGGUUGgu-GCCACCGGagcggacgagagaGGUACGCg -3'
miRNA:   3'- -CUCAACaugUGGUGGUCg------------CCGUGCGa -5'
9008 5' -55.6 NC_002512.2 + 181325 0.67 0.936788
Target:  5'- ----gGUACagcuccaGCCGCCggggcaucagcaGGCGGCACGCg -3'
miRNA:   3'- cucaaCAUG-------UGGUGG------------UCGCCGUGCGa -5'
9008 5' -55.6 NC_002512.2 + 57174 0.67 0.932384
Target:  5'- cGGGUUGccgcaggGCACCucgcGgCAGCGGuCGCGCa -3'
miRNA:   3'- -CUCAACa------UGUGG----UgGUCGCC-GUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.