Results 41 - 60 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 173327 | 0.67 | 0.85312 |
Target: 5'- gCCUGcGGGGUCUUCGgucCCGgCaCGCGCc -3' miRNA: 3'- aGGACcUCCUAGAAGU---GGC-G-GCGCGc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 202126 | 0.67 | 0.860496 |
Target: 5'- -gCUGGuGGcgccgGUCUcggcCGCCGCCGCGgGg -3' miRNA: 3'- agGACCuCC-----UAGAa---GUGGCGGCGCgC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 200316 | 0.67 | 0.860496 |
Target: 5'- cCCUcGGGGAgcggCUUC-CCGCCG-GCGu -3' miRNA: 3'- aGGAcCUCCUa---GAAGuGGCGGCgCGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 92893 | 0.67 | 0.837829 |
Target: 5'- cUCCUGGAGGcugGUCgaggcgaaCAgCGUCGCGUa -3' miRNA: 3'- -AGGACCUCC---UAGaa------GUgGCGGCGCGc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 135792 | 0.67 | 0.829926 |
Target: 5'- ---cGGAGGAgUCggaccggcCGCCGCCGuCGCGg -3' miRNA: 3'- aggaCCUCCU-AGaa------GUGGCGGC-GCGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 84451 | 0.67 | 0.829926 |
Target: 5'- ---cGGAGGAUCUcguccagCACCGCgGCGg- -3' miRNA: 3'- aggaCCUCCUAGAa------GUGGCGgCGCgc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 7454 | 0.67 | 0.845563 |
Target: 5'- gCCcGGGGGAa----GCCGCgGCGCGg -3' miRNA: 3'- aGGaCCUCCUagaagUGGCGgCGCGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 135014 | 0.67 | 0.850872 |
Target: 5'- gUCCUGGAGGAUUcggGCCggcggacggaucucGCCGCGg- -3' miRNA: 3'- -AGGACCUCCUAGaagUGG--------------CGGCGCgc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 73974 | 0.67 | 0.85312 |
Target: 5'- -gCUGGAGGAcgcgUCggCGCCGgacucguccCCGCGCc -3' miRNA: 3'- agGACCUCCU----AGaaGUGGC---------GGCGCGc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 4887 | 0.67 | 0.856093 |
Target: 5'- -gCUGGAGGAgcggCgacgggaagagggCGCCGCCGcCGCc -3' miRNA: 3'- agGACCUCCUa---Gaa-----------GUGGCGGC-GCGc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 70774 | 0.67 | 0.859036 |
Target: 5'- cUUCUGGGGcaGAUCccgucguccucgUCGCCGuuGCGCa -3' miRNA: 3'- -AGGACCUC--CUAGa-----------AGUGGCggCGCGc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 68931 | 0.67 | 0.860496 |
Target: 5'- gCCUcgGGGGGAUCcccccUCgugacccccccACCGCCGCaGCGa -3' miRNA: 3'- aGGA--CCUCCUAGa----AG-----------UGGCGGCG-CGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 123201 | 0.67 | 0.837829 |
Target: 5'- aCgaGGAGGAgCUgcccgaggacgUCGCCGCCcaGUGCGg -3' miRNA: 3'- aGgaCCUCCUaGA-----------AGUGGCGG--CGCGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 35906 | 0.68 | 0.813637 |
Target: 5'- aCCUGGAGagcgcGGUCaggaGCCGCCG-GCGg -3' miRNA: 3'- aGGACCUC-----CUAGaag-UGGCGGCgCGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 175189 | 0.68 | 0.813637 |
Target: 5'- ---cGGGGGGUUcucccgcgcgUUCAUCGCCGCGUc -3' miRNA: 3'- aggaCCUCCUAG----------AAGUGGCGGCGCGc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 8373 | 0.68 | 0.779322 |
Target: 5'- gCC--GAGGAUCcgCGgCGCCGCGCa -3' miRNA: 3'- aGGacCUCCUAGaaGUgGCGGCGCGc -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 153716 | 0.68 | 0.813637 |
Target: 5'- gUCCUGGucGGGUCUcacggCGCUGuCCGUGgGg -3' miRNA: 3'- -AGGACCu-CCUAGAa----GUGGC-GGCGCgC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 9941 | 0.68 | 0.796749 |
Target: 5'- aCCcGGGGGAUC--CACCcucccCCGCGCGu -3' miRNA: 3'- aGGaCCUCCUAGaaGUGGc----GGCGCGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 107872 | 0.68 | 0.796749 |
Target: 5'- gCgUGGAGGccGUCgUCACCuugGCCGcCGCGa -3' miRNA: 3'- aGgACCUCC--UAGaAGUGG---CGGC-GCGC- -5' |
|||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 134291 | 0.68 | 0.793305 |
Target: 5'- gUCCcGGAGGAUCgucuucgaggacgUCGCCgggGCCgGCGCc -3' miRNA: 3'- -AGGaCCUCCUAGa------------AGUGG---CGG-CGCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home