miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 103432 0.68 0.914781
Target:  5'- aCG-GCgaacaaGGCGGCCGCCgCCGUCGcCGg -3'
miRNA:   3'- -GCaCGag----CCGUUGGUGG-GGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 28080 0.68 0.902999
Target:  5'- gCG-GCggagaCGGCGgagaggucGCCGCCCCGUCcgCGc -3'
miRNA:   3'- -GCaCGa----GCCGU--------UGGUGGGGUAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 140075 0.68 0.919792
Target:  5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3'
miRNA:   3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5'
9010 3' -55.8 NC_002512.2 + 128383 0.69 0.883682
Target:  5'- cCGUcGC-CGGCGGCgGaCCCCGUC-UCGa -3'
miRNA:   3'- -GCA-CGaGCCGUUGgU-GGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 106733 0.69 0.862477
Target:  5'- uCGgcgGCgaucgCGGCGccGCCGCCCCGUCcccCGg -3'
miRNA:   3'- -GCa--CGa----GCCGU--UGGUGGGGUAGua-GC- -5'
9010 3' -55.8 NC_002512.2 + 193084 0.69 0.869748
Target:  5'- uGUGCUgCGGCGaguGCCGCUUCAUCuccgCGc -3'
miRNA:   3'- gCACGA-GCCGU---UGGUGGGGUAGua--GC- -5'
9010 3' -55.8 NC_002512.2 + 87539 0.69 0.85501
Target:  5'- cCGUuCUCGGCucCCACCCCG-CGUUc -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGGGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 107468 0.69 0.862477
Target:  5'- gCGUcCUCGGUggauuuguugAACCA-CCCGUCGUCGa -3'
miRNA:   3'- -GCAcGAGCCG----------UUGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 181488 0.69 0.874718
Target:  5'- gGUGCUCaggGGCAgcagcgaguuguacGCguUCCCGUCGUCGc -3'
miRNA:   3'- gCACGAG---CCGU--------------UGguGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 72651 0.69 0.869748
Target:  5'- aCG-GCUCGGCGAUCugUCCucggUGUCGa -3'
miRNA:   3'- -GCaCGAGCCGUUGGugGGGua--GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 158874 0.69 0.876818
Target:  5'- cCG-GCcggCGGCGGCC-CCCCGUCcuUCGu -3'
miRNA:   3'- -GCaCGa--GCCGUUGGuGGGGUAGu-AGC- -5'
9010 3' -55.8 NC_002512.2 + 209787 0.69 0.862477
Target:  5'- --aGCcCGGCGGCUACUUCAUgGUCGg -3'
miRNA:   3'- gcaCGaGCCGUUGGUGGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 192597 0.69 0.869748
Target:  5'- aCGUGUUCGGCccgaAACCggaACCCUGUgCGUUGg -3'
miRNA:   3'- -GCACGAGCCG----UUGG---UGGGGUA-GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 23025 0.69 0.869748
Target:  5'- --aGCUCGGC-GCCGCCCCcgaagaagAUCGUg- -3'
miRNA:   3'- gcaCGAGCCGuUGGUGGGG--------UAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 154757 0.69 0.869748
Target:  5'- gGUGg-CGGUGACCACCaCCAgcagCAUCa -3'
miRNA:   3'- gCACgaGCCGUUGGUGG-GGUa---GUAGc -5'
9010 3' -55.8 NC_002512.2 + 98727 0.69 0.869748
Target:  5'- aCGgGCUCGGCcgcuuccucucGGCCgcccuGCCCCGcCAUCGg -3'
miRNA:   3'- -GCaCGAGCCG-----------UUGG-----UGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 129388 0.7 0.839511
Target:  5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3'
miRNA:   3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 184415 0.7 0.81831
Target:  5'- --cGCUCGGCcuucuccgucgccucGGCCGCCgCCggCGUCGg -3'
miRNA:   3'- gcaCGAGCCG---------------UUGGUGG-GGuaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 184748 0.7 0.823303
Target:  5'- aCGUGaggaUCGGCGGgCGgCCCGUgGUCGu -3'
miRNA:   3'- -GCACg---AGCCGUUgGUgGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 166026 0.7 0.831492
Target:  5'- aCGcGUUCGGCGGCCGuuCCgggGUCAUCa -3'
miRNA:   3'- -GCaCGAGCCGUUGGUggGG---UAGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.