Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9010 | 3' | -55.8 | NC_002512.2 | + | 129388 | 0.7 | 0.839511 |
Target: 5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3' miRNA: 3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 82245 | 0.71 | 0.788979 |
Target: 5'- gGUaGCggGaGCGGCCGCCgCCGUCGUCGu -3' miRNA: 3'- gCA-CGagC-CGUUGGUGG-GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 38537 | 0.71 | 0.788979 |
Target: 5'- gGUcGCgCGGCGACCuacCCCCGUCG-CGg -3' miRNA: 3'- gCA-CGaGCCGUUGGu--GGGGUAGUaGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 134242 | 0.71 | 0.788979 |
Target: 5'- uGUGCcgggggCGGCcgAGCCGCCCCcuggccuUCGUCGu -3' miRNA: 3'- gCACGa-----GCCG--UUGGUGGGGu------AGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 150147 | 0.71 | 0.79778 |
Target: 5'- uCGUG-UCGGCGuccGCCAgCCCGUCcUCGc -3' miRNA: 3'- -GCACgAGCCGU---UGGUgGGGUAGuAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 96231 | 0.71 | 0.788979 |
Target: 5'- gCGgcgGCggCGGCGACCGCCCCGgacUCcgCc -3' miRNA: 3'- -GCa--CGa-GCCGUUGGUGGGGU---AGuaGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 146316 | 0.71 | 0.770987 |
Target: 5'- gCGUGUaCGGCcacGGCCGCUCCGUCcgCa -3' miRNA: 3'- -GCACGaGCCG---UUGGUGGGGUAGuaGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 21513 | 0.71 | 0.788979 |
Target: 5'- --aGCgUCGG--GCCACCUCGUCGUCGa -3' miRNA: 3'- gcaCG-AGCCguUGGUGGGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 129823 | 0.72 | 0.714479 |
Target: 5'- uCGUcgUCGGCGccGCCGCCCCcgCGUCu -3' miRNA: 3'- -GCAcgAGCCGU--UGGUGGGGuaGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 105101 | 0.72 | 0.752529 |
Target: 5'- aCGUGuCUccccggguccCGGCAGCCcucGCaCCCGUCGUCGc -3' miRNA: 3'- -GCAC-GA----------GCCGUUGG---UG-GGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 79819 | 0.72 | 0.714479 |
Target: 5'- aCGgcgGCggCGGCGGuccccccucCCGCCCCGUCGUCc -3' miRNA: 3'- -GCa--CGa-GCCGUU---------GGUGGGGUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 87207 | 0.72 | 0.756254 |
Target: 5'- aGUGCUCGGUGACgGCCCuCGUgcccguguauuuccaCAUCa -3' miRNA: 3'- gCACGAGCCGUUGgUGGG-GUA---------------GUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 126443 | 0.72 | 0.703808 |
Target: 5'- cCGgccgGCgacggCGGCGGCCGCCuuguucgCCGUCGUCGu -3' miRNA: 3'- -GCa---CGa----GCCGUUGGUGG-------GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 123505 | 0.72 | 0.704781 |
Target: 5'- gGUGCUCGGCccccgguCCuuCCUCGUCGUCu -3' miRNA: 3'- gCACGAGCCGuu-----GGu-GGGGUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 19367 | 0.72 | 0.743145 |
Target: 5'- uCGgggGCUCGGCGGCCucGCgCUcgCGUCGg -3' miRNA: 3'- -GCa--CGAGCCGUUGG--UGgGGuaGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 82923 | 0.72 | 0.724112 |
Target: 5'- aGU-CUCGGCcGCgGCCgCCGUCGUCGc -3' miRNA: 3'- gCAcGAGCCGuUGgUGG-GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 101713 | 0.73 | 0.685218 |
Target: 5'- --cGCUCGGCGACCucguCCCCGggcUCGUUc -3' miRNA: 3'- gcaCGAGCCGUUGGu---GGGGU---AGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 81369 | 0.73 | 0.695024 |
Target: 5'- cCGggGCgggCGGCGGCCGCCUCcUCGUCc -3' miRNA: 3'- -GCa-CGa--GCCGUUGGUGGGGuAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 137262 | 0.73 | 0.67537 |
Target: 5'- --cGC-CGGCGGCCGCCguccguCCGUCGUCGc -3' miRNA: 3'- gcaCGaGCCGUUGGUGG------GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 69528 | 0.73 | 0.67537 |
Target: 5'- cCGUGCgaGGCAuugaGCUGCCUCAUCGUCa -3' miRNA: 3'- -GCACGagCCGU----UGGUGGGGUAGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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