Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 9010 | 3' | -55.8 | NC_002512.2 | + | 81369 | 0.73 | 0.695024 |
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Target: 5'- cCGggGCgggCGGCGGCCGCCUCcUCGUCc -3' miRNA: 3'- -GCa-CGa--GCCGUUGGUGGGGuAGUAGc -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 137262 | 0.73 | 0.67537 |
|
Target: 5'- --cGC-CGGCGGCCGCCguccguCCGUCGUCGc -3' miRNA: 3'- gcaCGaGCCGUUGGUGG------GGUAGUAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 83162 | 0.74 | 0.625788 |
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Target: 5'- cCGgcgGCcgCGGCcGCCGCCCCGcCGUCGu -3' miRNA: 3'- -GCa--CGa-GCCGuUGGUGGGGUaGUAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 189611 | 0.75 | 0.57631 |
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Target: 5'- uCGUGCgCGGCGGCCGCaCgCgAUCGUCGc -3' miRNA: 3'- -GCACGaGCCGUUGGUG-G-GgUAGUAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 98158 | 0.77 | 0.480805 |
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Target: 5'- cCG-GUUCGGCGGucCCGCgCCCGUCAUCGu -3' miRNA: 3'- -GCaCGAGCCGUU--GGUG-GGGUAGUAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 155413 | 0.77 | 0.471655 |
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Target: 5'- uGUcGCUCuGCGACCgggaguGCCCCGUCGUCGu -3' miRNA: 3'- gCA-CGAGcCGUUGG------UGGGGUAGUAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 173727 | 1.08 | 0.005482 |
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Target: 5'- cCGUGCUCGGCAACCACCCCAUCAUCGc -3' miRNA: 3'- -GCACGAGCCGUUGGUGGGGUAGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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