Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9010 | 3' | -55.8 | NC_002512.2 | + | 178837 | 0.67 | 0.935656 |
Target: 5'- aCGUGCUCGGgucgcaggcacaCGugCGCguggUCCGUCGUCa -3' miRNA: 3'- -GCACGAGCC------------GUugGUG----GGGUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 157310 | 0.67 | 0.935656 |
Target: 5'- gCGUGaUCGGUAACCugaACCgCGUgAUCGa -3' miRNA: 3'- -GCACgAGCCGUUGG---UGGgGUAgUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 52202 | 0.67 | 0.935656 |
Target: 5'- -uUGUcCGGCGAUCACCCUucaAUCAaUCGg -3' miRNA: 3'- gcACGaGCCGUUGGUGGGG---UAGU-AGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 118818 | 0.67 | 0.940313 |
Target: 5'- uCGUGgUCGGCGACCGCgaggUCC-UCAgcgCGu -3' miRNA: 3'- -GCACgAGCCGUUGGUG----GGGuAGUa--GC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 68594 | 0.67 | 0.940313 |
Target: 5'- gGUGCUCGucguaggccaGCGACuCGCCCaCGUCAg-- -3' miRNA: 3'- gCACGAGC----------CGUUG-GUGGG-GUAGUagc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 172831 | 0.67 | 0.940313 |
Target: 5'- cCGUucGCcCGGCGcCC-CCCgGUCGUCGg -3' miRNA: 3'- -GCA--CGaGCCGUuGGuGGGgUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 96085 | 0.67 | 0.943439 |
Target: 5'- --cGCaccCGGCGcgaccgucguccccGCCGCCgCCGUCGUCGu -3' miRNA: 3'- gcaCGa--GCCGU--------------UGGUGG-GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 111808 | 0.67 | 0.944746 |
Target: 5'- --cGC-CGGCGccggaGCCGCCCCcUCcgCGg -3' miRNA: 3'- gcaCGaGCCGU-----UGGUGGGGuAGuaGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 192275 | 0.67 | 0.944746 |
Target: 5'- gCGUGCUCGGgAcgcuCUGCgUCGUCAUCc -3' miRNA: 3'- -GCACGAGCCgUu---GGUGgGGUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 118231 | 0.67 | 0.944746 |
Target: 5'- uCGUGCUCGGgGACgGCaCCGUCcUgGa -3' miRNA: 3'- -GCACGAGCCgUUGgUGgGGUAGuAgC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 223573 | 0.67 | 0.944746 |
Target: 5'- --cGCgggCGGCGGCCACCUCGaCGUg- -3' miRNA: 3'- gcaCGa--GCCGUUGGUGGGGUaGUAgc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 219244 | 0.67 | 0.944746 |
Target: 5'- uCGUGCUCGGCcGCCucugGCUgC-UCGUCc -3' miRNA: 3'- -GCACGAGCCGuUGG----UGGgGuAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 97607 | 0.67 | 0.948957 |
Target: 5'- cCGUGUucUCGGUGugCGCCgCCAuguacccgaUCAUCa -3' miRNA: 3'- -GCACG--AGCCGUugGUGG-GGU---------AGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 183423 | 0.67 | 0.948957 |
Target: 5'- gCGUGCUCGuCAGCCucuuCUUCGUC-UCGa -3' miRNA: 3'- -GCACGAGCcGUUGGu---GGGGUAGuAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 224718 | 0.67 | 0.948957 |
Target: 5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3' miRNA: 3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 179484 | 0.67 | 0.948957 |
Target: 5'- -cUGCuUCGGCGGCgucguCGCCaUCGUCGUCGg -3' miRNA: 3'- gcACG-AGCCGUUG-----GUGG-GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 110542 | 0.67 | 0.948957 |
Target: 5'- cCGUGaC-CGGCGuuuCCGCCCCcgCG-CGg -3' miRNA: 3'- -GCAC-GaGCCGUu--GGUGGGGuaGUaGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 63483 | 0.67 | 0.948957 |
Target: 5'- --gGCUCGGCAggACCAUCCCccgggCGg -3' miRNA: 3'- gcaCGAGCCGU--UGGUGGGGuaguaGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 207037 | 0.66 | 0.951775 |
Target: 5'- gCGUGCcgucCGGCAgguggaacgggcucGCCAUCaCgGUCGUCGa -3' miRNA: 3'- -GCACGa---GCCGU--------------UGGUGG-GgUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 160057 | 0.66 | 0.95295 |
Target: 5'- -uUGCUCuGCGACCACgUCAcCGUCa -3' miRNA: 3'- gcACGAGcCGUUGGUGgGGUaGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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