Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9010 | 3' | -55.8 | NC_002512.2 | + | 140727 | 0.66 | 0.96365 |
Target: 5'- uCGU-CUCGGCcuCCAUCCCGgagaCGUUGa -3' miRNA: 3'- -GCAcGAGCCGuuGGUGGGGUa---GUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 195725 | 0.66 | 0.96365 |
Target: 5'- aCGUGgaaggggagCGGgAACCGCUCCGaggUCGUCGg -3' miRNA: 3'- -GCACga-------GCCgUUGGUGGGGU---AGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 196706 | 0.66 | 0.964935 |
Target: 5'- -cUGUUCGGUuccgugaucgagaagAACCGCUUCGUCGUCc -3' miRNA: 3'- gcACGAGCCG---------------UUGGUGGGGUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 62058 | 0.66 | 0.966803 |
Target: 5'- aCGUGCgCGGgguccuCGGCCACCUCGUaGUUGg -3' miRNA: 3'- -GCACGaGCC------GUUGGUGGGGUAgUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 186409 | 0.66 | 0.966803 |
Target: 5'- gCGUcCUCGGCuuCCACgCCGUgcUCGg -3' miRNA: 3'- -GCAcGAGCCGuuGGUGgGGUAguAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 220008 | 0.66 | 0.966803 |
Target: 5'- --cGCcCGGCGggucgagagGCCGCUCCGUC-UCGg -3' miRNA: 3'- gcaCGaGCCGU---------UGGUGGGGUAGuAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 167429 | 0.66 | 0.966803 |
Target: 5'- uCGUGCggCGGCAcGCCugCgCGuUCGUCc -3' miRNA: 3'- -GCACGa-GCCGU-UGGugGgGU-AGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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