Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9010 | 3' | -55.8 | NC_002512.2 | + | 137262 | 0.73 | 0.67537 |
Target: 5'- --cGC-CGGCGGCCGCCguccguCCGUCGUCGc -3' miRNA: 3'- gcaCGaGCCGUUGGUGG------GGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 139886 | 0.68 | 0.890336 |
Target: 5'- uCGUGCUCcGCuACCugCUgcaCGUCGUCGu -3' miRNA: 3'- -GCACGAGcCGuUGGugGG---GUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 140075 | 0.68 | 0.919792 |
Target: 5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3' miRNA: 3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 140727 | 0.66 | 0.96365 |
Target: 5'- uCGU-CUCGGCcuCCAUCCCGgagaCGUUGa -3' miRNA: 3'- -GCAcGAGCCGuuGGUGGGGUa---GUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 143513 | 0.66 | 0.96365 |
Target: 5'- cCGUGCUCuccagGGCGcgccugGCgGCCUCGUCgccGUCGg -3' miRNA: 3'- -GCACGAG-----CCGU------UGgUGGGGUAG---UAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 146316 | 0.71 | 0.770987 |
Target: 5'- gCGUGUaCGGCcacGGCCGCUCCGUCcgCa -3' miRNA: 3'- -GCACGaGCCG---UUGGUGGGGUAGuaGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 150147 | 0.71 | 0.79778 |
Target: 5'- uCGUG-UCGGCGuccGCCAgCCCGUCcUCGc -3' miRNA: 3'- -GCACgAGCCGU---UGGUgGGGUAGuAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 154757 | 0.69 | 0.869748 |
Target: 5'- gGUGg-CGGUGACCACCaCCAgcagCAUCa -3' miRNA: 3'- gCACgaGCCGUUGGUGG-GGUa---GUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 155413 | 0.77 | 0.471655 |
Target: 5'- uGUcGCUCuGCGACCgggaguGCCCCGUCGUCGu -3' miRNA: 3'- gCA-CGAGcCGUUGG------UGGGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 156170 | 0.67 | 0.930775 |
Target: 5'- uCGcUGCUCGagcGCGACCAgCUCAUgGUCa -3' miRNA: 3'- -GC-ACGAGC---CGUUGGUgGGGUAgUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 157310 | 0.67 | 0.935656 |
Target: 5'- gCGUGaUCGGUAACCugaACCgCGUgAUCGa -3' miRNA: 3'- -GCACgAGCCGUUGG---UGGgGUAgUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 158874 | 0.69 | 0.876818 |
Target: 5'- cCG-GCcggCGGCGGCC-CCCCGUCcuUCGu -3' miRNA: 3'- -GCaCGa--GCCGUUGGuGGGGUAGu-AGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 158992 | 0.66 | 0.960293 |
Target: 5'- gCGggGCggaGGCGGCgGCCCCggCGUCc -3' miRNA: 3'- -GCa-CGag-CCGUUGgUGGGGuaGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 160057 | 0.66 | 0.95295 |
Target: 5'- -uUGCUCuGCGACCACgUCAcCGUCa -3' miRNA: 3'- gcACGAGcCGUUGGUGgGGUaGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 166026 | 0.7 | 0.831492 |
Target: 5'- aCGcGUUCGGCGGCCGuuCCgggGUCAUCa -3' miRNA: 3'- -GCaCGAGCCGUUGGUggGG---UAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 167429 | 0.66 | 0.966803 |
Target: 5'- uCGUGCggCGGCAcGCCugCgCGuUCGUCc -3' miRNA: 3'- -GCACGa-GCCGU-UGGugGgGU-AGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 167565 | 0.66 | 0.956728 |
Target: 5'- gGUGCccgUCGGCuuCUuCCCgGUCAUCc -3' miRNA: 3'- gCACG---AGCCGuuGGuGGGgUAGUAGc -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 172831 | 0.67 | 0.940313 |
Target: 5'- cCGUucGCcCGGCGcCC-CCCgGUCGUCGg -3' miRNA: 3'- -GCA--CGaGCCGUuGGuGGGgUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 173727 | 1.08 | 0.005482 |
Target: 5'- cCGUGCUCGGCAACCACCCCAUCAUCGc -3' miRNA: 3'- -GCACGAGCCGUUGGUGGGGUAGUAGC- -5' |
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9010 | 3' | -55.8 | NC_002512.2 | + | 176600 | 0.68 | 0.907818 |
Target: 5'- uCGUcaGCUUGGCcgugucgaucuCCACCCCGUCGggggcUCGg -3' miRNA: 3'- -GCA--CGAGCCGuu---------GGUGGGGUAGU-----AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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