miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 150147 0.71 0.79778
Target:  5'- uCGUG-UCGGCGuccGCCAgCCCGUCcUCGc -3'
miRNA:   3'- -GCACgAGCCGU---UGGUgGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 146316 0.71 0.770987
Target:  5'- gCGUGUaCGGCcacGGCCGCUCCGUCcgCa -3'
miRNA:   3'- -GCACGaGCCG---UUGGUGGGGUAGuaGc -5'
9010 3' -55.8 NC_002512.2 + 143513 0.66 0.96365
Target:  5'- cCGUGCUCuccagGGCGcgccugGCgGCCUCGUCgccGUCGg -3'
miRNA:   3'- -GCACGAG-----CCGU------UGgUGGGGUAG---UAGC- -5'
9010 3' -55.8 NC_002512.2 + 140727 0.66 0.96365
Target:  5'- uCGU-CUCGGCcuCCAUCCCGgagaCGUUGa -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGGGGUa---GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 140075 0.68 0.919792
Target:  5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3'
miRNA:   3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5'
9010 3' -55.8 NC_002512.2 + 139886 0.68 0.890336
Target:  5'- uCGUGCUCcGCuACCugCUgcaCGUCGUCGu -3'
miRNA:   3'- -GCACGAGcCGuUGGugGG---GUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 137262 0.73 0.67537
Target:  5'- --cGC-CGGCGGCCGCCguccguCCGUCGUCGc -3'
miRNA:   3'- gcaCGaGCCGUUGGUGG------GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 134242 0.71 0.788979
Target:  5'- uGUGCcgggggCGGCcgAGCCGCCCCcuggccuUCGUCGu -3'
miRNA:   3'- gCACGa-----GCCG--UUGGUGGGGu------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 129823 0.72 0.714479
Target:  5'- uCGUcgUCGGCGccGCCGCCCCcgCGUCu -3'
miRNA:   3'- -GCAcgAGCCGU--UGGUGGGGuaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 129388 0.7 0.839511
Target:  5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3'
miRNA:   3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 128383 0.69 0.883682
Target:  5'- cCGUcGC-CGGCGGCgGaCCCCGUC-UCGa -3'
miRNA:   3'- -GCA-CGaGCCGUUGgU-GGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 126443 0.72 0.703808
Target:  5'- cCGgccgGCgacggCGGCGGCCGCCuuguucgCCGUCGUCGu -3'
miRNA:   3'- -GCa---CGa----GCCGUUGGUGG-------GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 124197 0.66 0.960293
Target:  5'- --cGUUCGGCAcgcacAUCACCaCCGUCGUg- -3'
miRNA:   3'- gcaCGAGCCGU-----UGGUGG-GGUAGUAgc -5'
9010 3' -55.8 NC_002512.2 + 123505 0.72 0.704781
Target:  5'- gGUGCUCGGCccccgguCCuuCCUCGUCGUCu -3'
miRNA:   3'- gCACGAGCCGuu-----GGu-GGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 118818 0.67 0.940313
Target:  5'- uCGUGgUCGGCGACCGCgaggUCC-UCAgcgCGu -3'
miRNA:   3'- -GCACgAGCCGUUGGUG----GGGuAGUa--GC- -5'
9010 3' -55.8 NC_002512.2 + 118655 0.67 0.925669
Target:  5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3'
miRNA:   3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 118231 0.67 0.944746
Target:  5'- uCGUGCUCGGgGACgGCaCCGUCcUgGa -3'
miRNA:   3'- -GCACGAGCCgUUGgUGgGGUAGuAgC- -5'
9010 3' -55.8 NC_002512.2 + 117738 0.68 0.914781
Target:  5'- cCG-GCUCGccguCGACCGCCUCGUCuUCGc -3'
miRNA:   3'- -GCaCGAGCc---GUUGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 111808 0.67 0.944746
Target:  5'- --cGC-CGGCGccggaGCCGCCCCcUCcgCGg -3'
miRNA:   3'- gcaCGaGCCGU-----UGGUGGGGuAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 110685 0.7 0.814949
Target:  5'- gGUGCUCGcGCAGCCGCCgCAg----- -3'
miRNA:   3'- gCACGAGC-CGUUGGUGGgGUaguagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.