miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 184415 0.7 0.81831
Target:  5'- --cGCUCGGCcuucuccgucgccucGGCCGCCgCCggCGUCGg -3'
miRNA:   3'- gcaCGAGCCG---------------UUGGUGG-GGuaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 52202 0.67 0.935656
Target:  5'- -uUGUcCGGCGAUCACCCUucaAUCAaUCGg -3'
miRNA:   3'- gcACGaGCCGUUGGUGGGG---UAGU-AGC- -5'
9010 3' -55.8 NC_002512.2 + 160057 0.66 0.95295
Target:  5'- -uUGCUCuGCGACCACgUCAcCGUCa -3'
miRNA:   3'- gcACGAGcCGUUGGUGgGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 184748 0.7 0.823303
Target:  5'- aCGUGaggaUCGGCGGgCGgCCCGUgGUCGu -3'
miRNA:   3'- -GCACg---AGCCGUUgGUgGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 74511 0.66 0.95295
Target:  5'- --cGC-CGGCGccGCCGCCCCGaCcUCGa -3'
miRNA:   3'- gcaCGaGCCGU--UGGUGGGGUaGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 189611 0.75 0.57631
Target:  5'- uCGUGCgCGGCGGCCGCaCgCgAUCGUCGc -3'
miRNA:   3'- -GCACGaGCCGUUGGUG-G-GgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 224718 0.67 0.948957
Target:  5'- --gGC-CGGCcGCCGCCCCG--GUCGc -3'
miRNA:   3'- gcaCGaGCCGuUGGUGGGGUagUAGC- -5'
9010 3' -55.8 NC_002512.2 + 72439 0.73 0.665489
Target:  5'- aGUGCauaaCGGCAAUCAUaUCCAUCAUCGu -3'
miRNA:   3'- gCACGa---GCCGUUGGUG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 201703 0.73 0.685218
Target:  5'- gGUGCgggaUCGGCGGCgGCgUCGUCGUCGc -3'
miRNA:   3'- gCACG----AGCCGUUGgUGgGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 129823 0.72 0.714479
Target:  5'- uCGUcgUCGGCGccGCCGCCCCcgCGUCu -3'
miRNA:   3'- -GCAcgAGCCGU--UGGUGGGGuaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 105101 0.72 0.752529
Target:  5'- aCGUGuCUccccggguccCGGCAGCCcucGCaCCCGUCGUCGc -3'
miRNA:   3'- -GCAC-GA----------GCCGUUGG---UG-GGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 96231 0.71 0.788979
Target:  5'- gCGgcgGCggCGGCGACCGCCCCGgacUCcgCc -3'
miRNA:   3'- -GCa--CGa-GCCGUUGGUGGGGU---AGuaGc -5'
9010 3' -55.8 NC_002512.2 + 150147 0.71 0.79778
Target:  5'- uCGUG-UCGGCGuccGCCAgCCCGUCcUCGc -3'
miRNA:   3'- -GCACgAGCCGU---UGGUgGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 87539 0.69 0.85501
Target:  5'- cCGUuCUCGGCucCCACCCCG-CGUUc -3'
miRNA:   3'- -GCAcGAGCCGuuGGUGGGGUaGUAGc -5'
9010 3' -55.8 NC_002512.2 + 106733 0.69 0.862477
Target:  5'- uCGgcgGCgaucgCGGCGccGCCGCCCCGUCcccCGg -3'
miRNA:   3'- -GCa--CGa----GCCGU--UGGUGGGGUAGua-GC- -5'
9010 3' -55.8 NC_002512.2 + 158874 0.69 0.876818
Target:  5'- cCG-GCcggCGGCGGCC-CCCCGUCcuUCGu -3'
miRNA:   3'- -GCaCGa--GCCGUUGGuGGGGUAGu-AGC- -5'
9010 3' -55.8 NC_002512.2 + 217795 0.68 0.909001
Target:  5'- cCGgcugGCggaUCGGCGucGCCGuCCCgAUCGUCGa -3'
miRNA:   3'- -GCa---CG---AGCCGU--UGGU-GGGgUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 207686 0.67 0.935656
Target:  5'- --cGC-CGGCcgAAgCGCUCCGUCAUCGu -3'
miRNA:   3'- gcaCGaGCCG--UUgGUGGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 111808 0.67 0.944746
Target:  5'- --cGC-CGGCGccggaGCCGCCCCcUCcgCGg -3'
miRNA:   3'- gcaCGaGCCGU-----UGGUGGGGuAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 179484 0.67 0.948957
Target:  5'- -cUGCuUCGGCGGCgucguCGCCaUCGUCGUCGg -3'
miRNA:   3'- gcACG-AGCCGUUG-----GUGG-GGUAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.