miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 96231 0.71 0.788979
Target:  5'- gCGgcgGCggCGGCGACCGCCCCGgacUCcgCc -3'
miRNA:   3'- -GCa--CGa-GCCGUUGGUGGGGU---AGuaGc -5'
9010 3' -55.8 NC_002512.2 + 82245 0.71 0.788979
Target:  5'- gGUaGCggGaGCGGCCGCCgCCGUCGUCGu -3'
miRNA:   3'- gCA-CGagC-CGUUGGUGG-GGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 140075 0.68 0.919792
Target:  5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3'
miRNA:   3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5'
9010 3' -55.8 NC_002512.2 + 62058 0.66 0.966803
Target:  5'- aCGUGCgCGGgguccuCGGCCACCUCGUaGUUGg -3'
miRNA:   3'- -GCACGaGCC------GUUGGUGGGGUAgUAGC- -5'
9010 3' -55.8 NC_002512.2 + 25230 0.66 0.96365
Target:  5'- --cGC-CGGCGAUC-CCCCGcgCGUCGc -3'
miRNA:   3'- gcaCGaGCCGUUGGuGGGGUa-GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 79819 0.72 0.714479
Target:  5'- aCGgcgGCggCGGCGGuccccccucCCGCCCCGUCGUCc -3'
miRNA:   3'- -GCa--CGa-GCCGUU---------GGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 69528 0.73 0.67537
Target:  5'- cCGUGCgaGGCAuugaGCUGCCUCAUCGUCa -3'
miRNA:   3'- -GCACGagCCGU----UGGUGGGGUAGUAGc -5'
9010 3' -55.8 NC_002512.2 + 38537 0.71 0.788979
Target:  5'- gGUcGCgCGGCGACCuacCCCCGUCG-CGg -3'
miRNA:   3'- gCA-CGaGCCGUUGGu--GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 134242 0.71 0.788979
Target:  5'- uGUGCcgggggCGGCcgAGCCGCCCCcuggccuUCGUCGu -3'
miRNA:   3'- gCACGa-----GCCG--UUGGUGGGGu------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 117738 0.68 0.914781
Target:  5'- cCG-GCUCGccguCGACCGCCUCGUCuUCGc -3'
miRNA:   3'- -GCaCGAGCc---GUUGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 118655 0.67 0.925669
Target:  5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3'
miRNA:   3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 28080 0.68 0.902999
Target:  5'- gCG-GCggagaCGGCGgagaggucGCCGCCCCGUCcgCGc -3'
miRNA:   3'- -GCaCGa----GCCGU--------UGGUGGGGUAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 65074 0.68 0.896776
Target:  5'- cCG-GCUCGGCucuCCAgUCCCGUCG-CGa -3'
miRNA:   3'- -GCaCGAGCCGuu-GGU-GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 99096 0.68 0.896776
Target:  5'- gCGUGCugcgcgUCGGCGGCCcuCCUCGUgGUCc -3'
miRNA:   3'- -GCACG------AGCCGUUGGu-GGGGUAgUAGc -5'
9010 3' -55.8 NC_002512.2 + 139886 0.68 0.890336
Target:  5'- uCGUGCUCcGCuACCugCUgcaCGUCGUCGu -3'
miRNA:   3'- -GCACGAGcCGuUGGugGG---GUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 29613 0.67 0.930775
Target:  5'- aCG-GCUCGuCGuCCucguCCCCGUCGUCGu -3'
miRNA:   3'- -GCaCGAGCcGUuGGu---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 22133 0.67 0.935656
Target:  5'- aCG-GCggCGGCu-CCACCCCGgagCGUCc -3'
miRNA:   3'- -GCaCGa-GCCGuuGGUGGGGUa--GUAGc -5'
9010 3' -55.8 NC_002512.2 + 57478 0.66 0.96365
Target:  5'- aCGUGCUCcagccgGGCggUCAUCCCggCGUg- -3'
miRNA:   3'- -GCACGAG------CCGuuGGUGGGGuaGUAgc -5'
9010 3' -55.8 NC_002512.2 + 103432 0.68 0.914781
Target:  5'- aCG-GCgaacaaGGCGGCCGCCgCCGUCGcCGg -3'
miRNA:   3'- -GCaCGag----CCGUUGGUGG-GGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 129388 0.7 0.839511
Target:  5'- gGUGCUCGacgaccGCGGCCuCCCCAagGUCc -3'
miRNA:   3'- gCACGAGC------CGUUGGuGGGGUagUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.