miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9010 3' -55.8 NC_002512.2 + 67850 0.66 0.956728
Target:  5'- aCGcGCauagaaUCGGC-ACCACCUCGcCGUCGg -3'
miRNA:   3'- -GCaCG------AGCCGuUGGUGGGGUaGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 11929 0.66 0.954487
Target:  5'- --cGCUCGGCAAauaggcagucguuccCCGCCCCG--GUCc -3'
miRNA:   3'- gcaCGAGCCGUU---------------GGUGGGGUagUAGc -5'
9010 3' -55.8 NC_002512.2 + 79629 0.66 0.956728
Target:  5'- gGUaCUCGGCGuCguCCCCcUCGUCGu -3'
miRNA:   3'- gCAcGAGCCGUuGguGGGGuAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 84785 0.66 0.956728
Target:  5'- cCGUGUcggcCGGCAGCCgcgacGCCUCGcggaacUCGUCGa -3'
miRNA:   3'- -GCACGa---GCCGUUGG-----UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 39345 0.66 0.960293
Target:  5'- gGUGCcCaGCAGCCggucccucGCCCCGaccagcUCGUCGa -3'
miRNA:   3'- gCACGaGcCGUUGG--------UGGGGU------AGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 20855 0.66 0.960293
Target:  5'- --cGCUCcgggacGCGGCCGCCCCGcUCAUgGc -3'
miRNA:   3'- gcaCGAGc-----CGUUGGUGGGGU-AGUAgC- -5'
9010 3' -55.8 NC_002512.2 + 25230 0.66 0.96365
Target:  5'- --cGC-CGGCGAUC-CCCCGcgCGUCGc -3'
miRNA:   3'- gcaCGaGCCGUUGGuGGGGUa-GUAGC- -5'
9010 3' -55.8 NC_002512.2 + 57478 0.66 0.96365
Target:  5'- aCGUGCUCcagccgGGCggUCAUCCCggCGUg- -3'
miRNA:   3'- -GCACGAG------CCGuuGGUGGGGuaGUAgc -5'
9010 3' -55.8 NC_002512.2 + 110542 0.67 0.948957
Target:  5'- cCGUGaC-CGGCGuuuCCGCCCCcgCG-CGg -3'
miRNA:   3'- -GCAC-GaGCCGUu--GGUGGGGuaGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 63483 0.67 0.948957
Target:  5'- --gGCUCGGCAggACCAUCCCccgggCGg -3'
miRNA:   3'- gcaCGAGCCGU--UGGUGGGGuaguaGC- -5'
9010 3' -55.8 NC_002512.2 + 118231 0.67 0.944746
Target:  5'- uCGUGCUCGGgGACgGCaCCGUCcUgGa -3'
miRNA:   3'- -GCACGAGCCgUUGgUGgGGUAGuAgC- -5'
9010 3' -55.8 NC_002512.2 + 65074 0.68 0.896776
Target:  5'- cCG-GCUCGGCucuCCAgUCCCGUCG-CGa -3'
miRNA:   3'- -GCaCGAGCCGuu-GGU-GGGGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 28080 0.68 0.902999
Target:  5'- gCG-GCggagaCGGCGgagaggucGCCGCCCCGUCcgCGc -3'
miRNA:   3'- -GCaCGa----GCCGU--------UGGUGGGGUAGuaGC- -5'
9010 3' -55.8 NC_002512.2 + 103432 0.68 0.914781
Target:  5'- aCG-GCgaacaaGGCGGCCGCCgCCGUCGcCGg -3'
miRNA:   3'- -GCaCGag----CCGUUGGUGG-GGUAGUaGC- -5'
9010 3' -55.8 NC_002512.2 + 117738 0.68 0.914781
Target:  5'- cCG-GCUCGccguCGACCGCCUCGUCuUCGc -3'
miRNA:   3'- -GCaCGAGCc---GUUGGUGGGGUAGuAGC- -5'
9010 3' -55.8 NC_002512.2 + 140075 0.68 0.919792
Target:  5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3'
miRNA:   3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5'
9010 3' -55.8 NC_002512.2 + 118655 0.67 0.925669
Target:  5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3'
miRNA:   3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 29613 0.67 0.930775
Target:  5'- aCG-GCUCGuCGuCCucguCCCCGUCGUCGu -3'
miRNA:   3'- -GCaCGAGCcGUuGGu---GGGGUAGUAGC- -5'
9010 3' -55.8 NC_002512.2 + 22133 0.67 0.935656
Target:  5'- aCG-GCggCGGCu-CCACCCCGgagCGUCc -3'
miRNA:   3'- -GCaCGa-GCCGuuGGUGGGGUa--GUAGc -5'
9010 3' -55.8 NC_002512.2 + 118818 0.67 0.940313
Target:  5'- uCGUGgUCGGCGACCGCgaggUCC-UCAgcgCGu -3'
miRNA:   3'- -GCACgAGCCGUUGGUG----GGGuAGUa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.