Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 9010 | 3' | -55.8 | NC_002512.2 | + | 140075 | 0.68 | 0.919792 |
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Target: 5'- aCGUccuCUCGGCGcucaucgGCgACCCCGUCcuGUCGg -3' miRNA: 3'- -GCAc--GAGCCGU-------UGgUGGGGUAG--UAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 118655 | 0.67 | 0.925669 |
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Target: 5'- --cGCUCcgGGCGcccgGCCG-CCCGUCAUCGu -3' miRNA: 3'- gcaCGAG--CCGU----UGGUgGGGUAGUAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 29613 | 0.67 | 0.930775 |
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Target: 5'- aCG-GCUCGuCGuCCucguCCCCGUCGUCGu -3' miRNA: 3'- -GCaCGAGCcGUuGGu---GGGGUAGUAGC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 22133 | 0.67 | 0.935656 |
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Target: 5'- aCG-GCggCGGCu-CCACCCCGgagCGUCc -3' miRNA: 3'- -GCaCGa-GCCGuuGGUGGGGUa--GUAGc -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 68594 | 0.67 | 0.940313 |
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Target: 5'- gGUGCUCGucguaggccaGCGACuCGCCCaCGUCAg-- -3' miRNA: 3'- gCACGAGC----------CGUUG-GUGGG-GUAGUagc -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 118818 | 0.67 | 0.940313 |
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Target: 5'- uCGUGgUCGGCGACCGCgaggUCC-UCAgcgCGu -3' miRNA: 3'- -GCACgAGCCGUUGGUG----GGGuAGUa--GC- -5' |
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| 9010 | 3' | -55.8 | NC_002512.2 | + | 62058 | 0.66 | 0.966803 |
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Target: 5'- aCGUGCgCGGgguccuCGGCCACCUCGUaGUUGg -3' miRNA: 3'- -GCACGaGCC------GUUGGUGGGGUAgUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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