miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9011 3' -61.2 NC_002512.2 + 95250 0.66 0.850379
Target:  5'- gGGGCguccGGAGgGCCGcgcggcUCCUgaaCGGCGgggucggguUCCCg -3'
miRNA:   3'- -CCCG----CCUUgCGGC------AGGA---GCCGC---------AGGG- -5'
9011 3' -61.2 NC_002512.2 + 171736 0.66 0.850379
Target:  5'- --uCGGGACGUCGagCUCGGgG-CCCu -3'
miRNA:   3'- cccGCCUUGCGGCagGAGCCgCaGGG- -5'
9011 3' -61.2 NC_002512.2 + 21097 0.66 0.850379
Target:  5'- gGGGCGac-CGCCGUcucagacgcggaCCUUGGCcUUCCg -3'
miRNA:   3'- -CCCGCcuuGCGGCA------------GGAGCCGcAGGG- -5'
9011 3' -61.2 NC_002512.2 + 144676 0.66 0.850379
Target:  5'- cGGGCGagcgaGGACGaCGaCC-CGGCGaCCCa -3'
miRNA:   3'- -CCCGC-----CUUGCgGCaGGaGCCGCaGGG- -5'
9011 3' -61.2 NC_002512.2 + 215457 0.66 0.850379
Target:  5'- gGGaGCGGGucauCGCCGgcgucgacUCCUCcuGGCG-CCUg -3'
miRNA:   3'- -CC-CGCCUu---GCGGC--------AGGAG--CCGCaGGG- -5'
9011 3' -61.2 NC_002512.2 + 102213 0.66 0.850379
Target:  5'- cGGCGaucGCGUCGacgaggUCCUCGGCG-CUCu -3'
miRNA:   3'- cCCGCcu-UGCGGC------AGGAGCCGCaGGG- -5'
9011 3' -61.2 NC_002512.2 + 151044 0.66 0.850379
Target:  5'- cGGCGGcccgucACGCgGUCCUCGacggcgggggauGCgGUCUCg -3'
miRNA:   3'- cCCGCCu-----UGCGgCAGGAGC------------CG-CAGGG- -5'
9011 3' -61.2 NC_002512.2 + 111257 0.66 0.850379
Target:  5'- cGGGCGGcACGCgGacgagCUugaugUCGaCGUCCCg -3'
miRNA:   3'- -CCCGCCuUGCGgCa----GG-----AGCcGCAGGG- -5'
9011 3' -61.2 NC_002512.2 + 182431 0.66 0.850379
Target:  5'- -uGCGGAAC-UCGgCCUCGGCcUCCg -3'
miRNA:   3'- ccCGCCUUGcGGCaGGAGCCGcAGGg -5'
9011 3' -61.2 NC_002512.2 + 72652 0.66 0.850379
Target:  5'- cGGCucGGCGauCUGUCCUCGGUGUCg- -3'
miRNA:   3'- cCCGccUUGC--GGCAGGAGCCGCAGgg -5'
9011 3' -61.2 NC_002512.2 + 213673 0.66 0.850379
Target:  5'- aGGCGGAGgGgaG-CC-CGGCGUCgCCc -3'
miRNA:   3'- cCCGCCUUgCggCaGGaGCCGCAG-GG- -5'
9011 3' -61.2 NC_002512.2 + 38233 0.66 0.850379
Target:  5'- -cGCGGAcgucucCGCCGUCCU-GGC-UCCg -3'
miRNA:   3'- ccCGCCUu-----GCGGCAGGAgCCGcAGGg -5'
9011 3' -61.2 NC_002512.2 + 142278 0.66 0.850379
Target:  5'- cGGGCcgGGGACGgCGUCgaCGggggauccgacGCGUCCg -3'
miRNA:   3'- -CCCG--CCUUGCgGCAGgaGC-----------CGCAGGg -5'
9011 3' -61.2 NC_002512.2 + 62743 0.66 0.850379
Target:  5'- -cGCGGGgcACGCCGaCCUCGGaga-CCa -3'
miRNA:   3'- ccCGCCU--UGCGGCaGGAGCCgcagGG- -5'
9011 3' -61.2 NC_002512.2 + 104648 0.66 0.84965
Target:  5'- cGGGCcgaagugcaGGAucauGCGCUGggagcggcguuccUCCUCcGCGUCCUg -3'
miRNA:   3'- -CCCG---------CCU----UGCGGC-------------AGGAGcCGCAGGG- -5'
9011 3' -61.2 NC_002512.2 + 95545 0.66 0.84965
Target:  5'- cGGGUcuGGAGCucgGCCGcggcgagUCCgUCGGCGccggCCCc -3'
miRNA:   3'- -CCCG--CCUUG---CGGC-------AGG-AGCCGCa---GGG- -5'
9011 3' -61.2 NC_002512.2 + 101134 0.66 0.848186
Target:  5'- aGGGUGuccuugcccaccuuGAGCGCCGUCCgcccGUcUCCCa -3'
miRNA:   3'- -CCCGC--------------CUUGCGGCAGGagc-CGcAGGG- -5'
9011 3' -61.2 NC_002512.2 + 180391 0.66 0.848186
Target:  5'- cGGGgGGAcgaaccgcucccucGCGUagucgaaguCGUCCUCGGUGacggcgCCCn -3'
miRNA:   3'- -CCCgCCU--------------UGCG---------GCAGGAGCCGCa-----GGG- -5'
9011 3' -61.2 NC_002512.2 + 116398 0.66 0.848186
Target:  5'- gGGGCGGGuCGCCcugacgcccucgugGUUCUCcGUcUCCCg -3'
miRNA:   3'- -CCCGCCUuGCGG--------------CAGGAGcCGcAGGG- -5'
9011 3' -61.2 NC_002512.2 + 142164 0.66 0.84301
Target:  5'- -cGCGuccGAGaggaGCCGUCUcgCGGCGUCuCCg -3'
miRNA:   3'- ccCGC---CUUg---CGGCAGGa-GCCGCAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.