miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9011 5' -53.7 NC_002512.2 + 2111 0.66 0.993986
Target:  5'- gCCGcGGCUCGGUcGcgGGcGUcgagcguucggUCGUCGCc -3'
miRNA:   3'- -GGCcCUGAGCCA-CuaUC-CA-----------AGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 45524 0.66 0.993113
Target:  5'- aCGGGAC-CGcaauccGAUcGGggCGUCGCa -3'
miRNA:   3'- gGCCCUGaGCca----CUAuCCaaGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 201706 0.66 0.993113
Target:  5'- gCGGGA-UCGGcGGcGGcGUcgUCGUCGCg -3'
miRNA:   3'- gGCCCUgAGCCaCUaUC-CA--AGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 100277 0.66 0.993113
Target:  5'- aCGGaGCUCGGcGAgcgGGGcgagUUCGUCGg -3'
miRNA:   3'- gGCCcUGAGCCaCUa--UCC----AAGCAGCg -5'
9011 5' -53.7 NC_002512.2 + 104348 0.66 0.992141
Target:  5'- gUCGGGcggcggcucGCUUGGUGGaucggugGGGUUCuUCGUg -3'
miRNA:   3'- -GGCCC---------UGAGCCACUa------UCCAAGcAGCG- -5'
9011 5' -53.7 NC_002512.2 + 107315 0.66 0.989872
Target:  5'- uCgGGGugUUGGggGGcAGGUUcacguccucCGUCGCg -3'
miRNA:   3'- -GgCCCugAGCCa-CUaUCCAA---------GCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 83825 0.66 0.989872
Target:  5'- gCGGcGGCUcCGGgcccGGG-UCGUCGCa -3'
miRNA:   3'- gGCC-CUGA-GCCacuaUCCaAGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 183956 0.67 0.98856
Target:  5'- cCCGGGACgCGcgcucGGGcgUCGUCGCc -3'
miRNA:   3'- -GGCCCUGaGCcacuaUCCa-AGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 88111 0.67 0.98856
Target:  5'- gCGGGGCUgaucaCGGUca-GGGUcgacUCGUCGUa -3'
miRNA:   3'- gGCCCUGA-----GCCAcuaUCCA----AGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 96309 0.67 0.98856
Target:  5'- gCCGcGGGCgggcCGGUcgccgcacGAcAGGUgCGUCGCg -3'
miRNA:   3'- -GGC-CCUGa---GCCA--------CUaUCCAaGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 193348 0.67 0.98856
Target:  5'- aCGGG-CUCGccaccGUGGaggAGGagUUCGUCGCc -3'
miRNA:   3'- gGCCCuGAGC-----CACUa--UCC--AAGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 130680 0.67 0.98712
Target:  5'- aCCGGGACgggCugcucGUGGUGGGgccCGcCGCc -3'
miRNA:   3'- -GGCCCUGa--Gc----CACUAUCCaa-GCaGCG- -5'
9011 5' -53.7 NC_002512.2 + 74351 0.67 0.985544
Target:  5'- -aGGGACagaaggaGGUGAcccGGGUgagcacgccgUCGUCGCa -3'
miRNA:   3'- ggCCCUGag-----CCACUa--UCCA----------AGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 131517 0.67 0.983645
Target:  5'- cCCGGGACgggagacgCcGUGAaGGacgccaacggccaGUUCGUCGCg -3'
miRNA:   3'- -GGCCCUGa-------GcCACUaUC-------------CAAGCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 189590 0.67 0.981955
Target:  5'- gCCGGGucCUCGG-GAcgacGUUCGUgCGCg -3'
miRNA:   3'- -GGCCCu-GAGCCaCUauc-CAAGCA-GCG- -5'
9011 5' -53.7 NC_002512.2 + 191314 0.67 0.981364
Target:  5'- gCCGGGACgcgggUCGGgacgcgGGUgccguccgcgacggGGGUagGUCGCc -3'
miRNA:   3'- -GGCCCUG-----AGCCa-----CUA--------------UCCAagCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 98308 0.67 0.981364
Target:  5'- uCCGaGGugUCGGUGAgcacgcugaaGUCGCu -3'
miRNA:   3'- -GGC-CCugAGCCACUauccaag---CAGCG- -5'
9011 5' -53.7 NC_002512.2 + 49439 0.67 0.979928
Target:  5'- cCCaGGGGCggGGUGAaagUGGGcUCGUCa- -3'
miRNA:   3'- -GG-CCCUGagCCACU---AUCCaAGCAGcg -5'
9011 5' -53.7 NC_002512.2 + 115100 0.68 0.977735
Target:  5'- gCCGGGACgUCGG-GAcgccGUgcccCGUCGCg -3'
miRNA:   3'- -GGCCCUG-AGCCaCUauc-CAa---GCAGCG- -5'
9011 5' -53.7 NC_002512.2 + 98079 0.68 0.977735
Target:  5'- cCCGGGACguguccgagCGGaUGAcGGGgaCGgCGCg -3'
miRNA:   3'- -GGCCCUGa--------GCC-ACUaUCCaaGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.