miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9012 3' -52.8 NC_002512.2 + 133793 0.66 0.996752
Target:  5'- cGGcGGCGGGGACGA-CGGucGCGcCGGg -3'
miRNA:   3'- -CCaUCGCUCUUGCUaGCCc-UGCaGCU- -5'
9012 3' -52.8 NC_002512.2 + 97101 0.66 0.996752
Target:  5'- --cGGCGGGGGCGAcggcaagCGGGugaaccaGUCGAc -3'
miRNA:   3'- ccaUCGCUCUUGCUa------GCCCug-----CAGCU- -5'
9012 3' -52.8 NC_002512.2 + 95780 0.66 0.996752
Target:  5'- cGGgGGCGuccGAGCGGUaggcgcCGGGGCG-CGGa -3'
miRNA:   3'- -CCaUCGCu--CUUGCUA------GCCCUGCaGCU- -5'
9012 3' -52.8 NC_002512.2 + 204771 0.66 0.996752
Target:  5'- gGGgcGCGGGGACGAcCGGGggaaggagACGccCGGg -3'
miRNA:   3'- -CCauCGCUCUUGCUaGCCC--------UGCa-GCU- -5'
9012 3' -52.8 NC_002512.2 + 152874 0.66 0.996752
Target:  5'- cGGUGuGCGGGAGCGGUCcccGGuCGgUGAa -3'
miRNA:   3'- -CCAU-CGCUCUUGCUAGc--CCuGCaGCU- -5'
9012 3' -52.8 NC_002512.2 + 170802 0.66 0.996752
Target:  5'- cGGcGGCGAGGggaGCGAcgGGGGCGgcagCGGn -3'
miRNA:   3'- -CCaUCGCUCU---UGCUagCCCUGCa---GCU- -5'
9012 3' -52.8 NC_002512.2 + 227938 0.66 0.996752
Target:  5'- --cAGUGGGAACGGgaaGGGAgGUgGGg -3'
miRNA:   3'- ccaUCGCUCUUGCUag-CCCUgCAgCU- -5'
9012 3' -52.8 NC_002512.2 + 85519 0.66 0.996598
Target:  5'- cGGUGGCGAacagGAcgGCGGUCaugacggcgcuggcGGGGC-UCGAg -3'
miRNA:   3'- -CCAUCGCU----CU--UGCUAG--------------CCCUGcAGCU- -5'
9012 3' -52.8 NC_002512.2 + 97269 0.66 0.996214
Target:  5'- cGGUucCGGGAACGcAUCGGGgaggccgaGCGUCu- -3'
miRNA:   3'- -CCAucGCUCUUGC-UAGCCC--------UGCAGcu -5'
9012 3' -52.8 NC_002512.2 + 158151 0.66 0.996214
Target:  5'- aGUcGCGGGAGCGGUacugaUGGGAgGaUCGGu -3'
miRNA:   3'- cCAuCGCUCUUGCUA-----GCCCUgC-AGCU- -5'
9012 3' -52.8 NC_002512.2 + 154586 0.66 0.996214
Target:  5'- --cGGCGAGGGCGAcggCGGcauCGUCGc -3'
miRNA:   3'- ccaUCGCUCUUGCUa--GCCcu-GCAGCu -5'
9012 3' -52.8 NC_002512.2 + 90552 0.66 0.996214
Target:  5'- aGG-AGCGGGAggACGAgggCGaGGGCGaCGGc -3'
miRNA:   3'- -CCaUCGCUCU--UGCUa--GC-CCUGCaGCU- -5'
9012 3' -52.8 NC_002512.2 + 33637 0.66 0.996214
Target:  5'- --aGGCGAGAggcGCGcgCGGGcGCGgCGGa -3'
miRNA:   3'- ccaUCGCUCU---UGCuaGCCC-UGCaGCU- -5'
9012 3' -52.8 NC_002512.2 + 223771 0.66 0.996214
Target:  5'- --cAGCGAGGuCGAgggaccggacgUCgccgGGGACGUCGGc -3'
miRNA:   3'- ccaUCGCUCUuGCU-----------AG----CCCUGCAGCU- -5'
9012 3' -52.8 NC_002512.2 + 113664 0.66 0.996214
Target:  5'- cGGccGCGAGGguGCGcgCGGGucggACGUUGGc -3'
miRNA:   3'- -CCauCGCUCU--UGCuaGCCC----UGCAGCU- -5'
9012 3' -52.8 NC_002512.2 + 171638 0.66 0.99567
Target:  5'- --cAGCGAGGACGAguaucggcccuguugCGGGACaUCu- -3'
miRNA:   3'- ccaUCGCUCUUGCUa--------------GCCCUGcAGcu -5'
9012 3' -52.8 NC_002512.2 + 228073 0.66 0.995606
Target:  5'- gGGUGGgGGGAGCGu---GGAUGUgGAa -3'
miRNA:   3'- -CCAUCgCUCUUGCuagcCCUGCAgCU- -5'
9012 3' -52.8 NC_002512.2 + 42576 0.66 0.995606
Target:  5'- cGGgcgccGCGAG-GCGAgcggCGGGGCGgaccCGAa -3'
miRNA:   3'- -CCau---CGCUCuUGCUa---GCCCUGCa---GCU- -5'
9012 3' -52.8 NC_002512.2 + 124774 0.66 0.994919
Target:  5'- gGGU-GCGAGGGCugcCGGGAcccggggagacaCGUCGAc -3'
miRNA:   3'- -CCAuCGCUCUUGcuaGCCCU------------GCAGCU- -5'
9012 3' -52.8 NC_002512.2 + 131287 0.66 0.994919
Target:  5'- cGGaAGaGAG-ACGcgCGGGAgGUCGGg -3'
miRNA:   3'- -CCaUCgCUCuUGCuaGCCCUgCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.