miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9012 5' -60.8 NC_002512.2 + 98107 0.66 0.836202
Target:  5'- -gUCGCCUUCcCGCCcCGCUUgcCGGg -3'
miRNA:   3'- ggAGCGGGAGaGCGGaGCGAGa-GCCa -5'
9012 5' -60.8 NC_002512.2 + 184416 0.66 0.836202
Target:  5'- gCUCgGCCUUCUC-CgUCGC-CUCGGc -3'
miRNA:   3'- gGAG-CGGGAGAGcGgAGCGaGAGCCa -5'
9012 5' -60.8 NC_002512.2 + 41049 0.66 0.836202
Target:  5'- aCUCGUCgCUCUCGCuCUC-CUcCUUGGc -3'
miRNA:   3'- gGAGCGG-GAGAGCG-GAGcGA-GAGCCa -5'
9012 5' -60.8 NC_002512.2 + 1362 0.66 0.836202
Target:  5'- -gUCGUCCUCgUCGCCUCcGuCUCUCc-- -3'
miRNA:   3'- ggAGCGGGAG-AGCGGAG-C-GAGAGcca -5'
9012 5' -60.8 NC_002512.2 + 81411 0.66 0.836202
Target:  5'- uUCUCGUCCUCccCGCCgUCGCggCUCcGUc -3'
miRNA:   3'- -GGAGCGGGAGa-GCGG-AGCGa-GAGcCA- -5'
9012 5' -60.8 NC_002512.2 + 111571 0.66 0.828412
Target:  5'- uCCU--CCCUCUCGUCgucCGCgcgCUCGGc -3'
miRNA:   3'- -GGAgcGGGAGAGCGGa--GCGa--GAGCCa -5'
9012 5' -60.8 NC_002512.2 + 216859 0.66 0.828412
Target:  5'- aUCUCGCCCUCgUCGUC-CGCgUCgUCGu- -3'
miRNA:   3'- -GGAGCGGGAG-AGCGGaGCG-AG-AGCca -5'
9012 5' -60.8 NC_002512.2 + 155166 0.66 0.820465
Target:  5'- gUCUCGCUCgCUCGCggcgUCGUgagCUCGGa -3'
miRNA:   3'- -GGAGCGGGaGAGCGg---AGCGa--GAGCCa -5'
9012 5' -60.8 NC_002512.2 + 194967 0.66 0.820465
Target:  5'- aCCcCGCCgucggUCUCGuCCUC-CUCUCGGc -3'
miRNA:   3'- -GGaGCGGg----AGAGC-GGAGcGAGAGCCa -5'
9012 5' -60.8 NC_002512.2 + 96405 0.66 0.820465
Target:  5'- aCCggCGgCCUCggaccgaGCCUCGCUCccgcCGGUu -3'
miRNA:   3'- -GGa-GCgGGAGag-----CGGAGCGAGa---GCCA- -5'
9012 5' -60.8 NC_002512.2 + 29684 0.66 0.820465
Target:  5'- uCCUCGggCUCgUCGCgCUCGUccgUCUCGGa -3'
miRNA:   3'- -GGAGCggGAG-AGCG-GAGCG---AGAGCCa -5'
9012 5' -60.8 NC_002512.2 + 89878 0.66 0.820465
Target:  5'- -gUgGCUCUCcagCGCCUCGgUCUgGGUc -3'
miRNA:   3'- ggAgCGGGAGa--GCGGAGCgAGAgCCA- -5'
9012 5' -60.8 NC_002512.2 + 108867 0.66 0.814814
Target:  5'- gCUCGCCCgaggucagcacgcccCGCUUCGCUCugccgUCGGg -3'
miRNA:   3'- gGAGCGGGaga------------GCGGAGCGAG-----AGCCa -5'
9012 5' -60.8 NC_002512.2 + 115617 0.66 0.81237
Target:  5'- -aUCGCgCCguucgaggauUCUCGCCUCGCgcagC-CGGUc -3'
miRNA:   3'- ggAGCG-GG----------AGAGCGGAGCGa---GaGCCA- -5'
9012 5' -60.8 NC_002512.2 + 38859 0.66 0.81237
Target:  5'- gCCgCGCCC---CGCCUCGCaggcacCUCGGUc -3'
miRNA:   3'- -GGaGCGGGagaGCGGAGCGa-----GAGCCA- -5'
9012 5' -60.8 NC_002512.2 + 218823 0.66 0.81237
Target:  5'- gUCUCGCCCUCcgCgGCCcUGCUCUgCGa- -3'
miRNA:   3'- -GGAGCGGGAGa-G-CGGaGCGAGA-GCca -5'
9012 5' -60.8 NC_002512.2 + 117741 0.66 0.80413
Target:  5'- gCUCGCCgUCgacCGCCUCGUcuUCgcgccaugCGGg -3'
miRNA:   3'- gGAGCGGgAGa--GCGGAGCG--AGa-------GCCa -5'
9012 5' -60.8 NC_002512.2 + 19381 0.66 0.80413
Target:  5'- gCCUCGCgCUCgcgucgggcccUCGCCUCGCggaucugcucCUCGa- -3'
miRNA:   3'- -GGAGCGgGAG-----------AGCGGAGCGa---------GAGCca -5'
9012 5' -60.8 NC_002512.2 + 223639 0.66 0.795755
Target:  5'- gCUCGgCgggCUCGUCaUGCUCUCGGUc -3'
miRNA:   3'- gGAGCgGga-GAGCGGaGCGAGAGCCA- -5'
9012 5' -60.8 NC_002512.2 + 79586 0.67 0.78725
Target:  5'- gUCUCGCuCCUC-CGCCUC-UUCgCGGg -3'
miRNA:   3'- -GGAGCG-GGAGaGCGGAGcGAGaGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.