miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9013 3' -60.2 NC_002512.2 + 135247 0.66 0.864452
Target:  5'- uCGAGGcCGUCGUCcgCGccgcGCUCGACGa -3'
miRNA:   3'- -GCUCCaGCAGCGGaaGCc---CGGGCUGU- -5'
9013 3' -60.2 NC_002512.2 + 184769 0.66 0.864452
Target:  5'- cCGuGGUCGUCGaCCccgaggaCGuGGCCCGGg- -3'
miRNA:   3'- -GCuCCAGCAGC-GGaa-----GC-CCGGGCUgu -5'
9013 3' -60.2 NC_002512.2 + 159364 0.66 0.864452
Target:  5'- uCGGGGUCGgggCGUCccauucgCGGGUCCcGCGg -3'
miRNA:   3'- -GCUCCAGCa--GCGGaa-----GCCCGGGcUGU- -5'
9013 3' -60.2 NC_002512.2 + 21896 0.66 0.860188
Target:  5'- gCGAGGgaaaacgagcacgucUCGUCGCCgcuacggaGGGCgaCGACGu -3'
miRNA:   3'- -GCUCC---------------AGCAGCGGaag-----CCCGg-GCUGU- -5'
9013 3' -60.2 NC_002512.2 + 30424 0.66 0.857309
Target:  5'- gCGGGcGUCGUCGCggccCUgaacgCGGGCCUGcCc -3'
miRNA:   3'- -GCUC-CAGCAGCG----GAa----GCCCGGGCuGu -5'
9013 3' -60.2 NC_002512.2 + 33708 0.66 0.857309
Target:  5'- --cGGcCGUCGCCcccUCGGGCUCGcCc -3'
miRNA:   3'- gcuCCaGCAGCGGa--AGCCCGGGCuGu -5'
9013 3' -60.2 NC_002512.2 + 214262 0.66 0.857309
Target:  5'- cCGAGGaguuccgcUGUCGCCUggcCuGGCCCGAgGg -3'
miRNA:   3'- -GCUCCa-------GCAGCGGAa--GcCCGGGCUgU- -5'
9013 3' -60.2 NC_002512.2 + 105094 0.66 0.857309
Target:  5'- -cGGGUCGacgUGUCUcccCGGGuCCCGGCAg -3'
miRNA:   3'- gcUCCAGCa--GCGGAa--GCCC-GGGCUGU- -5'
9013 3' -60.2 NC_002512.2 + 157132 0.66 0.857309
Target:  5'- uCGGGG--GUCGgCggCGGGCCCGGg- -3'
miRNA:   3'- -GCUCCagCAGCgGaaGCCCGGGCUgu -5'
9013 3' -60.2 NC_002512.2 + 3162 0.66 0.849987
Target:  5'- cCGccGUCGUCGCCcgCGGccucccgucGCUCGACGc -3'
miRNA:   3'- -GCucCAGCAGCGGaaGCC---------CGGGCUGU- -5'
9013 3' -60.2 NC_002512.2 + 105599 0.66 0.849987
Target:  5'- gCGcGGUCGa-GCCgcacgccCGGGUCCGACGc -3'
miRNA:   3'- -GCuCCAGCagCGGaa-----GCCCGGGCUGU- -5'
9013 3' -60.2 NC_002512.2 + 6386 0.66 0.849987
Target:  5'- cCGuGGUCGUCGCga-CGGGCagggaggCGGCGg -3'
miRNA:   3'- -GCuCCAGCAGCGgaaGCCCGg------GCUGU- -5'
9013 3' -60.2 NC_002512.2 + 67637 0.66 0.849987
Target:  5'- gCGAcacGGUCGUCcacggGCCcccggacgCGGGCUCGACc -3'
miRNA:   3'- -GCU---CCAGCAG-----CGGaa------GCCCGGGCUGu -5'
9013 3' -60.2 NC_002512.2 + 3704 0.66 0.842492
Target:  5'- gGAGGUCGacccggUCGCUcccCGGGUCgGACu -3'
miRNA:   3'- gCUCCAGC------AGCGGaa-GCCCGGgCUGu -5'
9013 3' -60.2 NC_002512.2 + 82265 0.66 0.842492
Target:  5'- cCGucGUCGUCGCCcccgucgagggUCGGGUCgaggCGACGg -3'
miRNA:   3'- -GCucCAGCAGCGGa----------AGCCCGG----GCUGU- -5'
9013 3' -60.2 NC_002512.2 + 85211 0.66 0.842492
Target:  5'- -cGGGUCGUCGUCcUCGcucGCCCGGa- -3'
miRNA:   3'- gcUCCAGCAGCGGaAGCc--CGGGCUgu -5'
9013 3' -60.2 NC_002512.2 + 156996 0.66 0.83483
Target:  5'- --cGGcCGcCG-CUUCGGGCCCGAg- -3'
miRNA:   3'- gcuCCaGCaGCgGAAGCCCGGGCUgu -5'
9013 3' -60.2 NC_002512.2 + 142267 0.66 0.83483
Target:  5'- --cGGUCGUCGUC--CGGGCCgggGACGg -3'
miRNA:   3'- gcuCCAGCAGCGGaaGCCCGGg--CUGU- -5'
9013 3' -60.2 NC_002512.2 + 217604 0.66 0.827006
Target:  5'- gGGGGUCGUCGgCgacUCGGGC--GGCGc -3'
miRNA:   3'- gCUCCAGCAGCgGa--AGCCCGggCUGU- -5'
9013 3' -60.2 NC_002512.2 + 126946 0.66 0.827006
Target:  5'- cCGcGGacucCGUCGCCUguuacgaccUgGGGCCCGugGc -3'
miRNA:   3'- -GCuCCa---GCAGCGGA---------AgCCCGGGCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.