miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9013 5' -54.1 NC_002512.2 + 93493 0.65 0.985431
Target:  5'- gGGUAUCGGACCUgucggccaUGgcgUGCGugucgcuGGcCAUCa -3'
miRNA:   3'- -UCAUAGCCUGGG--------ACa--ACGC-------CCuGUAG- -5'
9013 5' -54.1 NC_002512.2 + 188920 0.66 0.983844
Target:  5'- --gGUCGGAgaguCCCgGUgGCGGGGCGc- -3'
miRNA:   3'- ucaUAGCCU----GGGaCAaCGCCCUGUag -5'
9013 5' -54.1 NC_002512.2 + 91914 0.66 0.981931
Target:  5'- ---cUCGGGCCCggcacGCaGGACAUCc -3'
miRNA:   3'- ucauAGCCUGGGacaa-CGcCCUGUAG- -5'
9013 5' -54.1 NC_002512.2 + 131135 0.66 0.981931
Target:  5'- -----aGGACCCgaugGCGGGGCAg- -3'
miRNA:   3'- ucauagCCUGGGacaaCGCCCUGUag -5'
9013 5' -54.1 NC_002512.2 + 193551 0.66 0.981931
Target:  5'- cGGgGUCGGGCgCUGUgGUGGGAgGg- -3'
miRNA:   3'- -UCaUAGCCUGgGACAaCGCCCUgUag -5'
9013 5' -54.1 NC_002512.2 + 213008 0.66 0.978524
Target:  5'- --cGUCGGGCCCggggcccucucgagGUgcguccgccggcUGCGGGGgAUCg -3'
miRNA:   3'- ucaUAGCCUGGGa-------------CA------------ACGCCCUgUAG- -5'
9013 5' -54.1 NC_002512.2 + 75484 0.66 0.977836
Target:  5'- ---cUCGGACCCcgaucgccuccgacgGggGCGGGACuuUCg -3'
miRNA:   3'- ucauAGCCUGGGa--------------CaaCGCCCUGu-AG- -5'
9013 5' -54.1 NC_002512.2 + 124513 0.66 0.975172
Target:  5'- ----cCGGACCCUGUacgucaagGCGGGcCAg- -3'
miRNA:   3'- ucauaGCCUGGGACAa-------CGCCCuGUag -5'
9013 5' -54.1 NC_002512.2 + 188745 0.66 0.975172
Target:  5'- cGUAUcCGGGCCCg--UGCGGaGuugcCAUCg -3'
miRNA:   3'- uCAUA-GCCUGGGacaACGCC-Cu---GUAG- -5'
9013 5' -54.1 NC_002512.2 + 118795 0.67 0.972554
Target:  5'- gGGUG-CGcACCCgcaUGCGGGACAUg -3'
miRNA:   3'- -UCAUaGCcUGGGacaACGCCCUGUAg -5'
9013 5' -54.1 NC_002512.2 + 97209 0.67 0.969742
Target:  5'- cGGcggCGGGCCgg---GCGGGACGUCg -3'
miRNA:   3'- -UCauaGCCUGGgacaaCGCCCUGUAG- -5'
9013 5' -54.1 NC_002512.2 + 107931 0.67 0.969742
Target:  5'- -----gGGACCCggGUcagcUGCaGGGGCAUCg -3'
miRNA:   3'- ucauagCCUGGGa-CA----ACG-CCCUGUAG- -5'
9013 5' -54.1 NC_002512.2 + 169076 0.67 0.969742
Target:  5'- uGUGUgGGGCCCgauUUGUGGGAgGg- -3'
miRNA:   3'- uCAUAgCCUGGGac-AACGCCCUgUag -5'
9013 5' -54.1 NC_002512.2 + 4212 0.67 0.966731
Target:  5'- cGGUGggagCGG-CCgCggGgaGCGGGACGUCg -3'
miRNA:   3'- -UCAUa---GCCuGG-Ga-CaaCGCCCUGUAG- -5'
9013 5' -54.1 NC_002512.2 + 88484 0.67 0.960086
Target:  5'- cGGUGUgGGucgauCCCgagUGCGGGAUcgCg -3'
miRNA:   3'- -UCAUAgCCu----GGGacaACGCCCUGuaG- -5'
9013 5' -54.1 NC_002512.2 + 87840 0.68 0.952577
Target:  5'- gGGcGUCGGGCCCUcGcgGCGGGuCGc- -3'
miRNA:   3'- -UCaUAGCCUGGGA-CaaCGCCCuGUag -5'
9013 5' -54.1 NC_002512.2 + 32451 0.68 0.948489
Target:  5'- aGGaGUCGGACgg-GUUGCGGGAgAUg -3'
miRNA:   3'- -UCaUAGCCUGggaCAACGCCCUgUAg -5'
9013 5' -54.1 NC_002512.2 + 95098 0.68 0.944174
Target:  5'- cGGcGUCGGGCCCgggGacGCGGGugGg- -3'
miRNA:   3'- -UCaUAGCCUGGGa--CaaCGCCCugUag -5'
9013 5' -54.1 NC_002512.2 + 124278 0.68 0.944174
Target:  5'- cGGcGUCGGACCCgGgcgUGCGGcucGACcgCg -3'
miRNA:   3'- -UCaUAGCCUGGGaCa--ACGCC---CUGuaG- -5'
9013 5' -54.1 NC_002512.2 + 190085 0.68 0.934853
Target:  5'- cGGUcagCGGGCUCgGcUGCGGGACcUCa -3'
miRNA:   3'- -UCAua-GCCUGGGaCaACGCCCUGuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.