miRNA display CGI


Results 1 - 20 of 306 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9014 3' -55.4 NC_002512.2 + 165722 0.66 0.976257
Target:  5'- gUCGGGGG-GUCGggGGCGCAUCGcuucaccuucGCCg -3'
miRNA:   3'- -AGCUCCUgCAGC--UCGCGUAGUu---------CGGg -5'
9014 3' -55.4 NC_002512.2 + 60757 0.66 0.976257
Target:  5'- cCGGgcGGACGagGAGCGCGaCGAccggaccgaacGCCCc -3'
miRNA:   3'- aGCU--CCUGCagCUCGCGUaGUU-----------CGGG- -5'
9014 3' -55.4 NC_002512.2 + 153393 0.66 0.976257
Target:  5'- -gGAGcGACGUgGAGCGCggCGgcGGUCg -3'
miRNA:   3'- agCUC-CUGCAgCUCGCGuaGU--UCGGg -5'
9014 3' -55.4 NC_002512.2 + 220547 0.66 0.976257
Target:  5'- gCGAGGGCGUCacGC-CGUCuaccuGGCCg -3'
miRNA:   3'- aGCUCCUGCAGcuCGcGUAGu----UCGGg -5'
9014 3' -55.4 NC_002512.2 + 190928 0.66 0.976257
Target:  5'- aCGAGGcaGCGgaaccagaccCGGGCGCAcgCGGGCgCCc -3'
miRNA:   3'- aGCUCC--UGCa---------GCUCGCGUa-GUUCG-GG- -5'
9014 3' -55.4 NC_002512.2 + 85911 0.66 0.976257
Target:  5'- aUCGAGuGucagaaGUCcaAGCGCGUCGuggaGGCCCu -3'
miRNA:   3'- -AGCUC-Cug----CAGc-UCGCGUAGU----UCGGG- -5'
9014 3' -55.4 NC_002512.2 + 125193 0.66 0.976257
Target:  5'- -aGAGGACGagacuccggUCGcGCGUGUCGucgucGGUCCg -3'
miRNA:   3'- agCUCCUGC---------AGCuCGCGUAGU-----UCGGG- -5'
9014 3' -55.4 NC_002512.2 + 102305 0.66 0.976257
Target:  5'- -aGGGcGACGUCGcggacGGUcCGUCGGGCCUc -3'
miRNA:   3'- agCUC-CUGCAGC-----UCGcGUAGUUCGGG- -5'
9014 3' -55.4 NC_002512.2 + 95410 0.66 0.976257
Target:  5'- gCGAGGGCGUC--GCGCAggagGAGCa- -3'
miRNA:   3'- aGCUCCUGCAGcuCGCGUag--UUCGgg -5'
9014 3' -55.4 NC_002512.2 + 10483 0.66 0.973774
Target:  5'- gCGuGGGCGUCGcGGCGgGcCGaccagcggaggcAGCCCa -3'
miRNA:   3'- aGCuCCUGCAGC-UCGCgUaGU------------UCGGG- -5'
9014 3' -55.4 NC_002512.2 + 135037 0.66 0.973774
Target:  5'- aUCGGGGGCccGUCuGA-CGCGUacAGCCCc -3'
miRNA:   3'- -AGCUCCUG--CAG-CUcGCGUAguUCGGG- -5'
9014 3' -55.4 NC_002512.2 + 180780 0.66 0.973774
Target:  5'- cCGGGcGAUGcccCGGGUGCugaagGUCAGGUCCg -3'
miRNA:   3'- aGCUC-CUGCa--GCUCGCG-----UAGUUCGGG- -5'
9014 3' -55.4 NC_002512.2 + 167413 0.66 0.973774
Target:  5'- aUGaAGGGCGUCGAucucGUGCGgcggCAcGCCUg -3'
miRNA:   3'- aGC-UCCUGCAGCU----CGCGUa---GUuCGGG- -5'
9014 3' -55.4 NC_002512.2 + 140603 0.66 0.973774
Target:  5'- gCGAGGugGUCcggGAGaCGC-UCcuGUCCu -3'
miRNA:   3'- aGCUCCugCAG---CUC-GCGuAGuuCGGG- -5'
9014 3' -55.4 NC_002512.2 + 92720 0.66 0.973774
Target:  5'- aUCGAGGaucaggGCGUCGAuGUuCGUCAuggaGGCCa -3'
miRNA:   3'- -AGCUCC------UGCAGCU-CGcGUAGU----UCGGg -5'
9014 3' -55.4 NC_002512.2 + 182372 0.66 0.973774
Target:  5'- cUCGuGGAUGUCGguGGUcuGCGUCcuGGCCa -3'
miRNA:   3'- -AGCuCCUGCAGC--UCG--CGUAGu-UCGGg -5'
9014 3' -55.4 NC_002512.2 + 8754 0.66 0.973774
Target:  5'- aCGGGGACG-CGguccucAGCGCcGUCGgaAGCUCc -3'
miRNA:   3'- aGCUCCUGCaGC------UCGCG-UAGU--UCGGG- -5'
9014 3' -55.4 NC_002512.2 + 101749 0.66 0.973774
Target:  5'- gCGAGGugGUggccCGGGCGCuccgucggCGGGaaCCCu -3'
miRNA:   3'- aGCUCCugCA----GCUCGCGua------GUUC--GGG- -5'
9014 3' -55.4 NC_002512.2 + 155611 0.66 0.97273
Target:  5'- aCGGGGACGUgCG-GCGCcugugcgaggaGAGCCg -3'
miRNA:   3'- aGCUCCUGCA-GCuCGCGuag--------UUCGGg -5'
9014 3' -55.4 NC_002512.2 + 6337 0.66 0.971107
Target:  5'- -gGGGGAC--CGGGCGCGgggccggCGGGCCg -3'
miRNA:   3'- agCUCCUGcaGCUCGCGUa------GUUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.