miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9014 5' -55.1 NC_002512.2 + 212100 0.66 0.980046
Target:  5'- cGCGUGCUCGCCgAGUUccacgGCGagaagcUgGUCCc- -3'
miRNA:   3'- -CGCACGAGUGG-UCAA-----CGC------AgCAGGcg -5'
9014 5' -55.1 NC_002512.2 + 177144 0.66 0.980046
Target:  5'- cGCGcGUUCugCuGcaGCGUC-UCCGCg -3'
miRNA:   3'- -CGCaCGAGugGuCaaCGCAGcAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 114602 0.66 0.980046
Target:  5'- uGCGUGCUCacgaucaccccgGCCAGgcGCucccCG-CCGCc -3'
miRNA:   3'- -CGCACGAG------------UGGUCaaCGca--GCaGGCG- -5'
9014 5' -55.1 NC_002512.2 + 198981 0.66 0.977854
Target:  5'- cGCGUGaugucCGCCAG----GUUGUCCGCg -3'
miRNA:   3'- -CGCACga---GUGGUCaacgCAGCAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 213278 0.66 0.977854
Target:  5'- cGUGUGCuUCAUCAGccGCGUgG-CCGa -3'
miRNA:   3'- -CGCACG-AGUGGUCaaCGCAgCaGGCg -5'
9014 5' -55.1 NC_002512.2 + 216242 0.66 0.977854
Target:  5'- cGCG-GCgagacggucgUCAUCAGgUGCGcCGcCCGCa -3'
miRNA:   3'- -CGCaCG----------AGUGGUCaACGCaGCaGGCG- -5'
9014 5' -55.1 NC_002512.2 + 155272 0.66 0.977854
Target:  5'- gGCGgucucgcGCUCcgcuCCGGUccGCGUCGgCCGUg -3'
miRNA:   3'- -CGCa------CGAGu---GGUCAa-CGCAGCaGGCG- -5'
9014 5' -55.1 NC_002512.2 + 100348 0.66 0.977854
Target:  5'- gGCGccgGC-CACgCAGcacgGCGUCGUCCuGUa -3'
miRNA:   3'- -CGCa--CGaGUG-GUCaa--CGCAGCAGG-CG- -5'
9014 5' -55.1 NC_002512.2 + 184316 0.66 0.975488
Target:  5'- aGCGUG---GCCAGcUGCGaCGUgCGCg -3'
miRNA:   3'- -CGCACgagUGGUCaACGCaGCAgGCG- -5'
9014 5' -55.1 NC_002512.2 + 114422 0.66 0.975242
Target:  5'- uGCGaGCUCugcgccaGCCGGUUcGCGUgaucggcgaaGUCCGCc -3'
miRNA:   3'- -CGCaCGAG-------UGGUCAA-CGCAg---------CAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 99095 0.66 0.975242
Target:  5'- cGCGUGCUgCGCguCGGcgGCccuccucGUgGUCCGCg -3'
miRNA:   3'- -CGCACGA-GUG--GUCaaCG-------CAgCAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 176490 0.66 0.972944
Target:  5'- gGCG-GC-CGCCAGgaagccCGUCGUCCa- -3'
miRNA:   3'- -CGCaCGaGUGGUCaac---GCAGCAGGcg -5'
9014 5' -55.1 NC_002512.2 + 179115 0.66 0.972944
Target:  5'- -gGUGCUCuuGCCGGUUcuaGUCuucaucccggacGUCCGCg -3'
miRNA:   3'- cgCACGAG--UGGUCAAcg-CAG------------CAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 152316 0.66 0.970214
Target:  5'- gGCGUGgCUCggacGCCcGUggGCGacccgcCGUCCGCg -3'
miRNA:   3'- -CGCAC-GAG----UGGuCAa-CGCa-----GCAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 3261 0.66 0.970214
Target:  5'- cGCGgGCUCGguCCcGUcgcUGCGUCG-CCGUc -3'
miRNA:   3'- -CGCaCGAGU--GGuCA---ACGCAGCaGGCG- -5'
9014 5' -55.1 NC_002512.2 + 180859 0.66 0.970214
Target:  5'- ---aGCUCGa-GGaUGCGuUCGUCCGCg -3'
miRNA:   3'- cgcaCGAGUggUCaACGC-AGCAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 76192 0.66 0.970214
Target:  5'- aCGUGCUcCACCcucgucAGUUgaaGCGUaccgcUGUCCGCc -3'
miRNA:   3'- cGCACGA-GUGG------UCAA---CGCA-----GCAGGCG- -5'
9014 5' -55.1 NC_002512.2 + 79606 0.66 0.968484
Target:  5'- cGCGgGCggcagCGCCGGgucgcgguacucgGCGUCGUCCc- -3'
miRNA:   3'- -CGCaCGa----GUGGUCaa-----------CGCAGCAGGcg -5'
9014 5' -55.1 NC_002512.2 + 133555 0.66 0.967292
Target:  5'- cGCGUGCUCuuCCAc-UGCGUCcccaucgaCCGCc -3'
miRNA:   3'- -CGCACGAGu-GGUcaACGCAGca------GGCG- -5'
9014 5' -55.1 NC_002512.2 + 189527 0.66 0.967292
Target:  5'- cCGgGCUCGCCGcg-GuCGgCGUCCGCg -3'
miRNA:   3'- cGCaCGAGUGGUcaaC-GCaGCAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.