Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9016 | 3' | -56.4 | NC_002512.2 | + | 133089 | 0.67 | 0.915826 |
Target: 5'- gGUCCGGuuggcgCGCAGcgaCUCC-CCGUCGg -3' miRNA: 3'- -CAGGUCca----GCGUCaa-GAGGaGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 120885 | 0.67 | 0.910116 |
Target: 5'- cUCgAGGUC-Cc--UCUCCUCCGUCGc -3' miRNA: 3'- cAGgUCCAGcGucaAGAGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 93849 | 0.67 | 0.910116 |
Target: 5'- gGUCgaCGGGUCGCGG-UCUCCcuUCCGagGu -3' miRNA: 3'- -CAG--GUCCAGCGUCaAGAGG--AGGCagC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 2610 | 0.68 | 0.904186 |
Target: 5'- cUCCuGGU-GCuGUUCUCCgCCGUCc -3' miRNA: 3'- cAGGuCCAgCGuCAAGAGGaGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 110069 | 0.68 | 0.904186 |
Target: 5'- cGUCCAGGUCGauCAGgagCUCCagCGUg- -3' miRNA: 3'- -CAGGUCCAGC--GUCaa-GAGGagGCAgc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 213524 | 0.68 | 0.904186 |
Target: 5'- cGUCCGGGUCGgGGUgC-CCUCggagCGUCu -3' miRNA: 3'- -CAGGUCCAGCgUCAaGaGGAG----GCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 198569 | 0.68 | 0.904186 |
Target: 5'- uGUCCAGGUCGUAca--UCCUCgaGUUGa -3' miRNA: 3'- -CAGGUCCAGCGUcaagAGGAGg-CAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 79619 | 0.68 | 0.878308 |
Target: 5'- -gCCGGGUCGCGGUaCUCgg-CGUCGu -3' miRNA: 3'- caGGUCCAGCGUCAaGAGgagGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 177550 | 0.68 | 0.871317 |
Target: 5'- uGUCCAGGaUCGUcuGGUUCggggCCGUCGc -3' miRNA: 3'- -CAGGUCC-AGCG--UCAAGaggaGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 110797 | 0.69 | 0.849163 |
Target: 5'- -aCCAGGUcCGCcgcgauGUUCUCCUCCccgaGUCc -3' miRNA: 3'- caGGUCCA-GCGu-----CAAGAGGAGG----CAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 194932 | 0.69 | 0.833466 |
Target: 5'- -aCCcGGUCGCGGccgCUCCgcuccCCGUCGc -3' miRNA: 3'- caGGuCCAGCGUCaa-GAGGa----GGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 143762 | 0.7 | 0.825358 |
Target: 5'- uUCCAGGUcCGCGac-CUCCUCCG-CGc -3' miRNA: 3'- cAGGUCCA-GCGUcaaGAGGAGGCaGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 38226 | 0.7 | 0.808657 |
Target: 5'- -cCCGGGaCGCGGacgUCUCCgCCGUCc -3' miRNA: 3'- caGGUCCaGCGUCa--AGAGGaGGCAGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 174640 | 0.71 | 0.773523 |
Target: 5'- aGUCCGGGUCGCcggcacGUUCUCCaggugCCG-Ca -3' miRNA: 3'- -CAGGUCCAGCGu-----CAAGAGGa----GGCaGc -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 191186 | 0.71 | 0.755217 |
Target: 5'- aUCUGGG-CGaccgUCUCCUCCGUCGg -3' miRNA: 3'- cAGGUCCaGCgucaAGAGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 2390 | 0.71 | 0.745908 |
Target: 5'- -cCCGGGUCGCGGcgUCUCCUaCCuccUCGc -3' miRNA: 3'- caGGUCCAGCGUCa-AGAGGA-GGc--AGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 122824 | 0.71 | 0.727019 |
Target: 5'- cGUCCAGcgcGUCGacCGGgaCUUCUCCGUCGg -3' miRNA: 3'- -CAGGUC---CAGC--GUCaaGAGGAGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 83083 | 0.73 | 0.639178 |
Target: 5'- cUCCAGGUCcCGGgcCUCCUCCGggucCGg -3' miRNA: 3'- cAGGUCCAGcGUCaaGAGGAGGCa---GC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 178240 | 0.75 | 0.56051 |
Target: 5'- cUCCGGGgacggCGCGG-UCUCCgggUCCGUCGc -3' miRNA: 3'- cAGGUCCa----GCGUCaAGAGG---AGGCAGC- -5' |
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9016 | 3' | -56.4 | NC_002512.2 | + | 43704 | 0.77 | 0.431248 |
Target: 5'- cUCCAGGagGCAGUUCUCCagacagaCGUCGa -3' miRNA: 3'- cAGGUCCagCGUCAAGAGGag-----GCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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