miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9017 3' -53.7 NC_002512.2 + 2142 0.66 0.983028
Target:  5'- ----aUCCcG-AGCCACUUCUGCcGCa -3'
miRNA:   3'- acaucAGGuCgUCGGUGAAGACGaCG- -5'
9017 3' -53.7 NC_002512.2 + 142004 0.66 0.983028
Target:  5'- gGgcGaUCCGGCGGCCGucuCUUCcGCgGCc -3'
miRNA:   3'- aCauC-AGGUCGUCGGU---GAAGaCGaCG- -5'
9017 3' -53.7 NC_002512.2 + 207157 0.66 0.983028
Target:  5'- -aUAGaaugUUAGUAGCCAaugUCUGUUGCg -3'
miRNA:   3'- acAUCa---GGUCGUCGGUga-AGACGACG- -5'
9017 3' -53.7 NC_002512.2 + 109130 0.66 0.982441
Target:  5'- --gAGUCCAGCAcgucggacucgaccGCC-CggCUGCUGa -3'
miRNA:   3'- acaUCAGGUCGU--------------CGGuGaaGACGACg -5'
9017 3' -53.7 NC_002512.2 + 131264 0.66 0.978819
Target:  5'- aUGUAcUCCAGCAGCgGguugacCUUCgacgGCUGg -3'
miRNA:   3'- -ACAUcAGGUCGUCGgU------GAAGa---CGACg -5'
9017 3' -53.7 NC_002512.2 + 13506 0.66 0.978819
Target:  5'- --cGGagaCGGCGGCCAggaagCUGCUGCg -3'
miRNA:   3'- acaUCag-GUCGUCGGUgaa--GACGACG- -5'
9017 3' -53.7 NC_002512.2 + 156533 0.66 0.974931
Target:  5'- --gGGUCCGGCGGCgggaacguguaCGCgacgcgggagagcCUGCUGCg -3'
miRNA:   3'- acaUCAGGUCGUCG-----------GUGaa-----------GACGACG- -5'
9017 3' -53.7 NC_002512.2 + 83154 0.66 0.973883
Target:  5'- cGUcgGGcCCGGCGGCCGCggCcGCcGCc -3'
miRNA:   3'- aCA--UCaGGUCGUCGGUGaaGaCGaCG- -5'
9017 3' -53.7 NC_002512.2 + 198431 0.66 0.973616
Target:  5'- gGUGGcCCAGCaggucuuugGGgCACUugaacagUCUGCUGUc -3'
miRNA:   3'- aCAUCaGGUCG---------UCgGUGA-------AGACGACG- -5'
9017 3' -53.7 NC_002512.2 + 181920 0.67 0.971124
Target:  5'- aUGUGGUCCgcGGCcuccGCCACcUCguuccucggGCUGUg -3'
miRNA:   3'- -ACAUCAGG--UCGu---CGGUGaAGa--------CGACG- -5'
9017 3' -53.7 NC_002512.2 + 112694 0.67 0.971124
Target:  5'- gGUAGUCCuGCAGgaGCUUCgggugGUUGa -3'
miRNA:   3'- aCAUCAGGuCGUCggUGAAGa----CGACg -5'
9017 3' -53.7 NC_002512.2 + 119782 0.67 0.968161
Target:  5'- gUGUGGUagaaCAGCAGCUGCaccggccUCUGC-GCc -3'
miRNA:   3'- -ACAUCAg---GUCGUCGGUGa------AGACGaCG- -5'
9017 3' -53.7 NC_002512.2 + 110181 0.67 0.968161
Target:  5'- --cGG-CCGGcCGGCCGCUUCUcGC-GCg -3'
miRNA:   3'- acaUCaGGUC-GUCGGUGAAGA-CGaCG- -5'
9017 3' -53.7 NC_002512.2 + 201671 0.67 0.96466
Target:  5'- --cGGUUCcuucuucggcgagGGCGGCCGCgUCUGgUGCg -3'
miRNA:   3'- acaUCAGG-------------UCGUCGGUGaAGACgACG- -5'
9017 3' -53.7 NC_002512.2 + 108312 0.67 0.961601
Target:  5'- gUGUGGUCCauGGCGGCgCGCggCggGCggucgGCg -3'
miRNA:   3'- -ACAUCAGG--UCGUCG-GUGaaGa-CGa----CG- -5'
9017 3' -53.7 NC_002512.2 + 134065 0.67 0.961601
Target:  5'- ---cGUCCGguGCAGCCAUcaCcgGCUGCg -3'
miRNA:   3'- acauCAGGU--CGUCGGUGaaGa-CGACG- -5'
9017 3' -53.7 NC_002512.2 + 209786 0.67 0.961601
Target:  5'- --aAGcCCGGCGGCUACUUCaugGUcgGCg -3'
miRNA:   3'- acaUCaGGUCGUCGGUGAAGa--CGa-CG- -5'
9017 3' -53.7 NC_002512.2 + 175885 0.67 0.957992
Target:  5'- aUGUuGUCCAcGUAGCuCACcagCgGCUGCg -3'
miRNA:   3'- -ACAuCAGGU-CGUCG-GUGaa-GaCGACG- -5'
9017 3' -53.7 NC_002512.2 + 125871 0.68 0.950094
Target:  5'- -cUGGUCCGGCGGgCACg---GCUGg -3'
miRNA:   3'- acAUCAGGUCGUCgGUGaagaCGACg -5'
9017 3' -53.7 NC_002512.2 + 72676 0.68 0.941264
Target:  5'- aGUAGUCCAGCAcCUGgUUCaGgUGCu -3'
miRNA:   3'- aCAUCAGGUCGUcGGUgAAGaCgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.