miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9017 5' -56.3 NC_002512.2 + 185198 0.66 0.958494
Target:  5'- aCGCGgcGGCGGucgacGC-CGCGGUGGCccGCg -3'
miRNA:   3'- gGCGU--CCGUCua---CGaGUGCUACCG--CG- -5'
9017 5' -56.3 NC_002512.2 + 143148 0.66 0.958494
Target:  5'- gUGCAGGCAGAUcgaGgUC-CGGuUGGcCGCc -3'
miRNA:   3'- gGCGUCCGUCUA---CgAGuGCU-ACC-GCG- -5'
9017 5' -56.3 NC_002512.2 + 144011 0.66 0.958494
Target:  5'- gCGCAGGUGGGgacggcacugGCUCGacaGAaGGCGg -3'
miRNA:   3'- gGCGUCCGUCUa---------CGAGUg--CUaCCGCg -5'
9017 5' -56.3 NC_002512.2 + 10972 0.66 0.958494
Target:  5'- -gGcCAGGCAGcgGC--ACGAgccgccccgcgUGGCGCg -3'
miRNA:   3'- ggC-GUCCGUCuaCGagUGCU-----------ACCGCG- -5'
9017 5' -56.3 NC_002512.2 + 219052 0.66 0.958494
Target:  5'- gCCGCGGcGCGGG-GCUCccCGcgGGCu- -3'
miRNA:   3'- -GGCGUC-CGUCUaCGAGu-GCuaCCGcg -5'
9017 5' -56.3 NC_002512.2 + 132207 0.66 0.958494
Target:  5'- aCCGuCAGGCcGAUGUUgAUGucccGCGCg -3'
miRNA:   3'- -GGC-GUCCGuCUACGAgUGCuac-CGCG- -5'
9017 5' -56.3 NC_002512.2 + 181479 0.66 0.958494
Target:  5'- gUC-CGGGUAGGUGCUCAgG--GGCaGCa -3'
miRNA:   3'- -GGcGUCCGUCUACGAGUgCuaCCG-CG- -5'
9017 5' -56.3 NC_002512.2 + 83804 0.66 0.957778
Target:  5'- aCCGCGucgggcgcgccggcGGCGGcgGCUC-CGGgcccgggucgucgcaGGCGCu -3'
miRNA:   3'- -GGCGU--------------CCGUCuaCGAGuGCUa--------------CCGCG- -5'
9017 5' -56.3 NC_002512.2 + 95520 0.66 0.954829
Target:  5'- cCCGCAGGCAGAUcgUCAgGuccGUGUa -3'
miRNA:   3'- -GGCGUCCGUCUAcgAGUgCuacCGCG- -5'
9017 5' -56.3 NC_002512.2 + 82328 0.66 0.954829
Target:  5'- gCCGCGGGCcgccccgGCggguaGCGGUgGGCGUg -3'
miRNA:   3'- -GGCGUCCGucua---CGag---UGCUA-CCGCG- -5'
9017 5' -56.3 NC_002512.2 + 136353 0.66 0.954829
Target:  5'- gUCGCGGGUcGGUcGCUCguuGAUGGCcaGCg -3'
miRNA:   3'- -GGCGUCCGuCUA-CGAGug-CUACCG--CG- -5'
9017 5' -56.3 NC_002512.2 + 91948 0.66 0.954829
Target:  5'- uCCGCAGGCAGGUGauccgcugUCugGA-GGa-- -3'
miRNA:   3'- -GGCGUCCGUCUACg-------AGugCUaCCgcg -5'
9017 5' -56.3 NC_002512.2 + 110746 0.66 0.954829
Target:  5'- gUGCAGGCGGAaggacgGCUCGgcgUGAUcccGCGCc -3'
miRNA:   3'- gGCGUCCGUCUa-----CGAGU---GCUAc--CGCG- -5'
9017 5' -56.3 NC_002512.2 + 110352 0.66 0.954829
Target:  5'- -aGCGGGCcaacaGCUCGgacgaccuggUGGUGGCGCu -3'
miRNA:   3'- ggCGUCCGucua-CGAGU----------GCUACCGCG- -5'
9017 5' -56.3 NC_002512.2 + 108749 0.66 0.954829
Target:  5'- gCGgAGGCAG-UGCgcgGCGcgGGCGa -3'
miRNA:   3'- gGCgUCCGUCuACGag-UGCuaCCGCg -5'
9017 5' -56.3 NC_002512.2 + 94947 0.66 0.950951
Target:  5'- gCGUccGGGCGGccucGCUCGCGuucagGUGGCuGCg -3'
miRNA:   3'- gGCG--UCCGUCua--CGAGUGC-----UACCG-CG- -5'
9017 5' -56.3 NC_002512.2 + 59376 0.66 0.950951
Target:  5'- aCGUGGcGgAGAUGCgcgaCAUGugcGUGGCGCu -3'
miRNA:   3'- gGCGUC-CgUCUACGa---GUGC---UACCGCG- -5'
9017 5' -56.3 NC_002512.2 + 5251 0.66 0.950951
Target:  5'- gCGUAGGCcGAgGC-CGCGgcGGCGa -3'
miRNA:   3'- gGCGUCCGuCUaCGaGUGCuaCCGCg -5'
9017 5' -56.3 NC_002512.2 + 127401 0.66 0.950951
Target:  5'- gCCGCcuGCGGGaccGCcacCGCGAcgGGCGCg -3'
miRNA:   3'- -GGCGucCGUCUa--CGa--GUGCUa-CCGCG- -5'
9017 5' -56.3 NC_002512.2 + 118072 0.66 0.950951
Target:  5'- uCCGCggAGGgGGcgGCUCcgGCGccGGCGg -3'
miRNA:   3'- -GGCG--UCCgUCuaCGAG--UGCuaCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.