miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 214177 0.66 0.926542
Target:  5'- -gUCGAGCcCGUCAUCG--UCGCGGAg -3'
miRNA:   3'- gaGGCUCGuGCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 91908 0.66 0.926542
Target:  5'- uCUCCuggggcggcGGCGCGCCGUCGGCg-GCcGAc -3'
miRNA:   3'- -GAGGc--------UCGUGCGGUAGUCGagCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 166017 0.66 0.926542
Target:  5'- gCUCCGGGgACGCguUCGGCggcCGUuccGGGg -3'
miRNA:   3'- -GAGGCUCgUGCGguAGUCGa--GCG---UCU- -5'
9018 3' -57.3 NC_002512.2 + 224660 0.66 0.924453
Target:  5'- -cCCGAGUucgacuuucccgcCGCCGUCGGCUggccCGCGGu -3'
miRNA:   3'- gaGGCUCGu------------GCGGUAGUCGA----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 40361 0.66 0.921253
Target:  5'- cCUCgGGGCcuGCGCCGcUCGGuCUC-CAGAu -3'
miRNA:   3'- -GAGgCUCG--UGCGGU-AGUC-GAGcGUCU- -5'
9018 3' -57.3 NC_002512.2 + 25863 0.66 0.921253
Target:  5'- ---aGAGUuCGCCGUCGGCcCGCAcGAa -3'
miRNA:   3'- gaggCUCGuGCGGUAGUCGaGCGU-CU- -5'
9018 3' -57.3 NC_002512.2 + 27462 0.66 0.921253
Target:  5'- aCUCCGcgGGuCACGCCAcuguUCcGCgCGCGGGa -3'
miRNA:   3'- -GAGGC--UC-GUGCGGU----AGuCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 118070 0.66 0.921253
Target:  5'- aCUCCGcggagggggcGGCuccgGCGCCggCGGCgaccgCGCGGAc -3'
miRNA:   3'- -GAGGC----------UCG----UGCGGuaGUCGa----GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 120899 0.66 0.921253
Target:  5'- cCUCCGucGCcCGCUucuUCAGUUCGCuGGc -3'
miRNA:   3'- -GAGGCu-CGuGCGGu--AGUCGAGCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 156550 0.66 0.915738
Target:  5'- uUCgGAGCGCGUgA-CGGCUgaGCGGAa -3'
miRNA:   3'- gAGgCUCGUGCGgUaGUCGAg-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 154139 0.66 0.915738
Target:  5'- uCUCCGAcGCGCGCUcgGUCGccucccGUUCgGCGGAc -3'
miRNA:   3'- -GAGGCU-CGUGCGG--UAGU------CGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 39809 0.66 0.915738
Target:  5'- -gCCGAGCcCGCUgaccggccgcgGcCAGCUCGUGGAu -3'
miRNA:   3'- gaGGCUCGuGCGG-----------UaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 101227 0.66 0.91
Target:  5'- -gCCGGGUuccgGCGCCggCAGUUCgagauGCAGAa -3'
miRNA:   3'- gaGGCUCG----UGCGGuaGUCGAG-----CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 58940 0.66 0.91
Target:  5'- -aUCGAGgGCagaGUCAGCUCGUAGAc -3'
miRNA:   3'- gaGGCUCgUGcggUAGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 82033 0.66 0.91
Target:  5'- gUCgGGGuCGCGCCggCGGCggUCGCGGc -3'
miRNA:   3'- gAGgCUC-GUGCGGuaGUCG--AGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 135324 0.66 0.91
Target:  5'- -cCCGAGguCGgCGUCAGC-CGCGc- -3'
miRNA:   3'- gaGGCUCguGCgGUAGUCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 165923 0.66 0.91
Target:  5'- uUCCGAGCugGUUugguGUCcGCUUGcCAGGu -3'
miRNA:   3'- gAGGCUCGugCGG----UAGuCGAGC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 5439 0.66 0.91
Target:  5'- -aCCGAGacCACG-CGUCGGCgCGUAGAg -3'
miRNA:   3'- gaGGCUC--GUGCgGUAGUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 120278 0.66 0.91
Target:  5'- cCUCCGAGUucaGCGUgaugaaCGUCGGCUugUGCAGc -3'
miRNA:   3'- -GAGGCUCG---UGCG------GUAGUCGA--GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 102337 0.66 0.904039
Target:  5'- gCUCCGguacgacaAGCGCGUCcUCGGCcUGCAGu -3'
miRNA:   3'- -GAGGC--------UCGUGCGGuAGUCGaGCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.