miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 165923 0.66 0.91
Target:  5'- uUCCGAGCugGUUugguGUCcGCUUGcCAGGu -3'
miRNA:   3'- gAGGCUCGugCGG----UAGuCGAGC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 135324 0.66 0.91
Target:  5'- -cCCGAGguCGgCGUCAGC-CGCGc- -3'
miRNA:   3'- gaGGCUCguGCgGUAGUCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 120899 0.66 0.921253
Target:  5'- cCUCCGucGCcCGCUucuUCAGUUCGCuGGc -3'
miRNA:   3'- -GAGGCu-CGuGCGGu--AGUCGAGCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 118070 0.66 0.921253
Target:  5'- aCUCCGcggagggggcGGCuccgGCGCCggCGGCgaccgCGCGGAc -3'
miRNA:   3'- -GAGGC----------UCG----UGCGGuaGUCGa----GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 27462 0.66 0.921253
Target:  5'- aCUCCGcgGGuCACGCCAcuguUCcGCgCGCGGGa -3'
miRNA:   3'- -GAGGC--UC-GUGCGGU----AGuCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 39809 0.66 0.915738
Target:  5'- -gCCGAGCcCGCUgaccggccgcgGcCAGCUCGUGGAu -3'
miRNA:   3'- gaGGCUCGuGCGG-----------UaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 24840 0.67 0.897858
Target:  5'- gUCCGGGCccGCgGCCgGUCGGCg-GCGGAc -3'
miRNA:   3'- gAGGCUCG--UG-CGG-UAGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 91993 0.67 0.89146
Target:  5'- gUCCGGGUcucccgcguCGCCGgcggCGGaCUCGCGGGc -3'
miRNA:   3'- gAGGCUCGu--------GCGGUa---GUC-GAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 116768 0.67 0.884848
Target:  5'- uCUCCGAggagagGCACGaCGUCAGCgUCGCc-- -3'
miRNA:   3'- -GAGGCU------CGUGCgGUAGUCG-AGCGucu -5'
9018 3' -57.3 NC_002512.2 + 83248 0.67 0.884848
Target:  5'- cCUCCucgucGC-CGCCAgCAGCUgGCGGAu -3'
miRNA:   3'- -GAGGcu---CGuGCGGUaGUCGAgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 129486 0.67 0.897858
Target:  5'- --aCGAGgACGCCGUCgccaacuggAGCUCGCu-- -3'
miRNA:   3'- gagGCUCgUGCGGUAG---------UCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 140680 0.67 0.870995
Target:  5'- aUgCGGGCcuGCGUCAUCGGCUacaGCGGc -3'
miRNA:   3'- gAgGCUCG--UGCGGUAGUCGAg--CGUCu -5'
9018 3' -57.3 NC_002512.2 + 124186 0.67 0.878024
Target:  5'- -cCCGAGCGCGgCGUuCGGCaCGCAc- -3'
miRNA:   3'- gaGGCUCGUGCgGUA-GUCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 24937 0.67 0.884174
Target:  5'- uUCCGAGUccacucuGCGCCAUCGGagaGCAu- -3'
miRNA:   3'- gAGGCUCG-------UGCGGUAGUCgagCGUcu -5'
9018 3' -57.3 NC_002512.2 + 102263 0.67 0.884847
Target:  5'- gUCCGGGCGuCGuCCAucUCGGCUCgGCGc- -3'
miRNA:   3'- gAGGCUCGU-GC-GGU--AGUCGAG-CGUcu -5'
9018 3' -57.3 NC_002512.2 + 177122 0.67 0.884847
Target:  5'- gUCCGGGUGCGCCAgcagGGCcCGCGc- -3'
miRNA:   3'- gAGGCUCGUGCGGUag--UCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 217782 0.67 0.884847
Target:  5'- -gCCGGGguCGCgGcCGGCUgGCGGAu -3'
miRNA:   3'- gaGGCUCguGCGgUaGUCGAgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 124697 0.67 0.89146
Target:  5'- aUCCGGgcGCACGCCGUCcuggGGCgcgUGCAc- -3'
miRNA:   3'- gAGGCU--CGUGCGGUAG----UCGa--GCGUcu -5'
9018 3' -57.3 NC_002512.2 + 178125 0.67 0.897858
Target:  5'- cCUCCucGCucauCGUCGUCAGCgucCGCAGc -3'
miRNA:   3'- -GAGGcuCGu---GCGGUAGUCGa--GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 197804 0.67 0.897858
Target:  5'- -cCCGGGC-CGCCAUCGGCgacccccccUGcCGGAg -3'
miRNA:   3'- gaGGCUCGuGCGGUAGUCGa--------GC-GUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.