miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 34392 0.68 0.848717
Target:  5'- -cCCGAucuuCACgGCCcUCAGCUCGCGGu -3'
miRNA:   3'- gaGGCUc---GUG-CGGuAGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 10760 0.68 0.856336
Target:  5'- ---aGAGCGCGUCGUCGGCcccgcCGCGGu -3'
miRNA:   3'- gaggCUCGUGCGGUAGUCGa----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 37290 0.68 0.856336
Target:  5'- -gCCGcGGCGCGCCG-CAGCa-GCGGGa -3'
miRNA:   3'- gaGGC-UCGUGCGGUaGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 72862 0.68 0.856336
Target:  5'- gCUCCGGGCcgcguCGCCGUUG--UCGCGGGg -3'
miRNA:   3'- -GAGGCUCGu----GCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 226681 0.69 0.772651
Target:  5'- uCUCUGAGCGCcggGCCGUC-GCcCGCGGc -3'
miRNA:   3'- -GAGGCUCGUG---CGGUAGuCGaGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 133143 0.69 0.802822
Target:  5'- -cUCGAGCACguagcaggcggcggaGCCAUCGcGCUCGCGa- -3'
miRNA:   3'- gaGGCUCGUG---------------CGGUAGU-CGAGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 202027 0.69 0.799354
Target:  5'- -gCCGGGUccccCGCCGgucCGGCUCGCGGu -3'
miRNA:   3'- gaGGCUCGu---GCGGUa--GUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 112193 0.69 0.807981
Target:  5'- -gCCGcaGGUGCGCCAcgCAGCUCGUcGAc -3'
miRNA:   3'- gaGGC--UCGUGCGGUa-GUCGAGCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 9460 0.69 0.781682
Target:  5'- gCUCCGgcGGCugGCCGUaGGCggGCGGGc -3'
miRNA:   3'- -GAGGC--UCGugCGGUAgUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 83809 0.69 0.763504
Target:  5'- -gUCGGGCGCGCCGgcggcggCGGCUC-CGGGc -3'
miRNA:   3'- gaGGCUCGUGCGGUa------GUCGAGcGUCU- -5'
9018 3' -57.3 NC_002512.2 + 195839 0.69 0.772651
Target:  5'- -gUgGGGCACGCC-UCGagcaaccggcGCUCGCGGAa -3'
miRNA:   3'- gaGgCUCGUGCGGuAGU----------CGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 94681 0.69 0.762583
Target:  5'- uCUCCG-GCGCGCagcugcccucgugCGaCAGCUCGCGGu -3'
miRNA:   3'- -GAGGCuCGUGCG-------------GUaGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 201624 0.7 0.735435
Target:  5'- -gCCGAGCgguagGCGCCGUCGuaCUCGCGGc -3'
miRNA:   3'- gaGGCUCG-----UGCGGUAGUc-GAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 139261 0.7 0.754246
Target:  5'- -gCCGGGuCGCGCCGccCGGCgCGCGGGg -3'
miRNA:   3'- gaGGCUC-GUGCGGUa-GUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 74374 0.7 0.735435
Target:  5'- --gUGAGCACGCCGUCG--UCGCAGc -3'
miRNA:   3'- gagGCUCGUGCGGUAGUcgAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 128509 0.7 0.715321
Target:  5'- gCUCCGAcgaGCACGUCAUCGucuccccGUUCGUGGGg -3'
miRNA:   3'- -GAGGCU---CGUGCGGUAGU-------CGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 82138 0.7 0.754246
Target:  5'- -gCUGAGCGCGUC--CAGCUUGCGGu -3'
miRNA:   3'- gaGGCUCGUGCGGuaGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 152359 0.7 0.744887
Target:  5'- cCUCCGAGCACggagaccgGCCGU-GGCcggUCGUAGAc -3'
miRNA:   3'- -GAGGCUCGUG--------CGGUAgUCG---AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 69886 0.71 0.700768
Target:  5'- gUUCG-GCAcCGCCAUCAGCUCcucguagcacugguaGCAGGu -3'
miRNA:   3'- gAGGCuCGU-GCGGUAGUCGAG---------------CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 113198 0.71 0.696866
Target:  5'- uUCCaGAGCgGCGUCGgccagCGGCUCGCGGu -3'
miRNA:   3'- gAGG-CUCG-UGCGGUa----GUCGAGCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.