miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 169758 1.09 0.003315
Target:  5'- gCUCCGAGCACGCCAUCAGCUCGCAGAg -3'
miRNA:   3'- -GAGGCUCGUGCGGUAGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 25009 0.76 0.429103
Target:  5'- gUCCGAGagcuCGCCGUCGG-UCGCGGAc -3'
miRNA:   3'- gAGGCUCgu--GCGGUAGUCgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 77581 0.76 0.420516
Target:  5'- gUCCGAGcCACGCCGagCGGUcccUCGCGGAu -3'
miRNA:   3'- gAGGCUC-GUGCGGUa-GUCG---AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 158228 0.76 0.412035
Target:  5'- gUCCGGGC-CGCCcaaguUCGGCUCGguGGc -3'
miRNA:   3'- gAGGCUCGuGCGGu----AGUCGAGCguCU- -5'
9018 3' -57.3 NC_002512.2 + 4159 0.75 0.473521
Target:  5'- -aCUGAGCGaguCGCCG-CGGCUCGCGGGc -3'
miRNA:   3'- gaGGCUCGU---GCGGUaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 9681 0.74 0.500317
Target:  5'- -cCCGGGC-CGCCGUCgggccccggcgggGGUUCGCGGAa -3'
miRNA:   3'- gaGGCUCGuGCGGUAG-------------UCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 116988 0.73 0.578246
Target:  5'- gUCCGGGCGgGCCGaCGGCcgcaCGCAGGg -3'
miRNA:   3'- gAGGCUCGUgCGGUaGUCGa---GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 201725 0.72 0.607866
Target:  5'- aUCUGAGCACGggaCGUCuuuCUCGCAGAu -3'
miRNA:   3'- gAGGCUCGUGCg--GUAGuc-GAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 167508 0.72 0.607866
Target:  5'- gUCCGAGgGCGCCAUgCGGCUCuCcGAg -3'
miRNA:   3'- gAGGCUCgUGCGGUA-GUCGAGcGuCU- -5'
9018 3' -57.3 NC_002512.2 + 123932 0.72 0.647565
Target:  5'- --gCGGGCugGCCGUCAGaCUCGUg-- -3'
miRNA:   3'- gagGCUCGugCGGUAGUC-GAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 37625 0.72 0.647565
Target:  5'- -cCCGAGCACGCUcgcguagaccagAUCGGCggaacaucucUCGCGGGc -3'
miRNA:   3'- gaGGCUCGUGCGG------------UAGUCG----------AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 142361 0.72 0.623738
Target:  5'- -gCCGAGaacggagauaccCGCCAUCGGCUCcGCGGAg -3'
miRNA:   3'- gaGGCUCgu----------GCGGUAGUCGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 55795 0.72 0.617782
Target:  5'- uUCCGAGCccuaucgaGCGCCAUCcGCgcggCGguGAa -3'
miRNA:   3'- gAGGCUCG--------UGCGGUAGuCGa---GCguCU- -5'
9018 3' -57.3 NC_002512.2 + 144115 0.71 0.696866
Target:  5'- cCUCCGAGuCGCggucuaucucgGCCAggUCGGC-CGCGGAg -3'
miRNA:   3'- -GAGGCUC-GUG-----------CGGU--AGUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 75753 0.71 0.696866
Target:  5'- -aCCGAGCGCG-CGUCGGagacCGCGGAg -3'
miRNA:   3'- gaGGCUCGUGCgGUAGUCga--GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 216424 0.71 0.687075
Target:  5'- gUCCGGGgACGCCA--GGCUCGCc-- -3'
miRNA:   3'- gAGGCUCgUGCGGUagUCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 69886 0.71 0.700768
Target:  5'- gUUCG-GCAcCGCCAUCAGCUCcucguagcacugguaGCAGGu -3'
miRNA:   3'- gAGGCuCGU-GCGGUAGUCGAG---------------CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 113198 0.71 0.696866
Target:  5'- uUCCaGAGCgGCGUCGgccagCGGCUCGCGGu -3'
miRNA:   3'- gAGG-CUCG-UGCGGUa----GUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 139261 0.7 0.754246
Target:  5'- -gCCGGGuCGCGCCGccCGGCgCGCGGGg -3'
miRNA:   3'- gaGGCUC-GUGCGGUa-GUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 82138 0.7 0.754246
Target:  5'- -gCUGAGCGCGUC--CAGCUUGCGGu -3'
miRNA:   3'- gaGGCUCGUGCGGuaGUCGAGCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.