Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9018 | 3' | -57.3 | NC_002512.2 | + | 201624 | 0.7 | 0.735435 |
Target: 5'- -gCCGAGCgguagGCGCCGUCGuaCUCGCGGc -3' miRNA: 3'- gaGGCUCG-----UGCGGUAGUc-GAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 152359 | 0.7 | 0.744887 |
Target: 5'- cCUCCGAGCACggagaccgGCCGU-GGCcggUCGUAGAc -3' miRNA: 3'- -GAGGCUCGUG--------CGGUAgUCG---AGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 139261 | 0.7 | 0.754246 |
Target: 5'- -gCCGGGuCGCGCCGccCGGCgCGCGGGg -3' miRNA: 3'- gaGGCUC-GUGCGGUa-GUCGaGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 82138 | 0.7 | 0.754246 |
Target: 5'- -gCUGAGCGCGUC--CAGCUUGCGGu -3' miRNA: 3'- gaGGCUCGUGCGGuaGUCGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 94681 | 0.69 | 0.762583 |
Target: 5'- uCUCCG-GCGCGCagcugcccucgugCGaCAGCUCGCGGu -3' miRNA: 3'- -GAGGCuCGUGCG-------------GUaGUCGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 83809 | 0.69 | 0.763504 |
Target: 5'- -gUCGGGCGCGCCGgcggcggCGGCUC-CGGGc -3' miRNA: 3'- gaGGCUCGUGCGGUa------GUCGAGcGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 195839 | 0.69 | 0.772651 |
Target: 5'- -gUgGGGCACGCC-UCGagcaaccggcGCUCGCGGAa -3' miRNA: 3'- gaGgCUCGUGCGGuAGU----------CGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 226681 | 0.69 | 0.772651 |
Target: 5'- uCUCUGAGCGCcggGCCGUC-GCcCGCGGc -3' miRNA: 3'- -GAGGCUCGUG---CGGUAGuCGaGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 9460 | 0.69 | 0.781682 |
Target: 5'- gCUCCGgcGGCugGCCGUaGGCggGCGGGc -3' miRNA: 3'- -GAGGC--UCGugCGGUAgUCGagCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 202027 | 0.69 | 0.799354 |
Target: 5'- -gCCGGGUccccCGCCGgucCGGCUCGCGGu -3' miRNA: 3'- gaGGCUCGu---GCGGUa--GUCGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 133143 | 0.69 | 0.802822 |
Target: 5'- -cUCGAGCACguagcaggcggcggaGCCAUCGcGCUCGCGa- -3' miRNA: 3'- gaGGCUCGUG---------------CGGUAGU-CGAGCGUcu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 112193 | 0.69 | 0.807981 |
Target: 5'- -gCCGcaGGUGCGCCAcgCAGCUCGUcGAc -3' miRNA: 3'- gaGGC--UCGUGCGGUa-GUCGAGCGuCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 154691 | 0.68 | 0.816458 |
Target: 5'- gCUCCGAGCG-GCCGUCcGGCgucgaGCGGc -3' miRNA: 3'- -GAGGCUCGUgCGGUAG-UCGag---CGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 139323 | 0.68 | 0.824776 |
Target: 5'- cCUCuUGAGCACGgCGUCuuucgaUCGCAGAa -3' miRNA: 3'- -GAG-GCUCGUGCgGUAGucg---AGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 179222 | 0.68 | 0.824776 |
Target: 5'- uUUCGAucuuGUGCGCCAgCAGCUgGCGGGc -3' miRNA: 3'- gAGGCU----CGUGCGGUaGUCGAgCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 196744 | 0.68 | 0.824777 |
Target: 5'- uUCCGAGUccgugucagGCGCCGUCuGGaaaaauuaUCGCGGAc -3' miRNA: 3'- gAGGCUCG---------UGCGGUAG-UCg-------AGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 115467 | 0.68 | 0.832931 |
Target: 5'- -aCCG-GCugGCgCAg-AGCUCGCAGGc -3' miRNA: 3'- gaGGCuCGugCG-GUagUCGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 114420 | 0.68 | 0.832931 |
Target: 5'- cCUgCGAGCucuGCGCCAgcCGGUUCGCGuGAu -3' miRNA: 3'- -GAgGCUCG---UGCGGUa-GUCGAGCGU-CU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 14335 | 0.68 | 0.832931 |
Target: 5'- -gCCGAGgGCGCCGaCGGC-CaGCAGGa -3' miRNA: 3'- gaGGCUCgUGCGGUaGUCGaG-CGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 84707 | 0.68 | 0.832931 |
Target: 5'- aCUCCGuGCGCGCgCAguacugcaggaUCcGCUCGCGcGAc -3' miRNA: 3'- -GAGGCuCGUGCG-GU-----------AGuCGAGCGU-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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