Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9018 | 3' | -57.3 | NC_002512.2 | + | 115467 | 0.68 | 0.832931 |
Target: 5'- -aCCG-GCugGCgCAg-AGCUCGCAGGc -3' miRNA: 3'- gaGGCuCGugCG-GUagUCGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 198619 | 0.68 | 0.836944 |
Target: 5'- aCUCCGGGCacacguacacguccGCGuCCAUCAGCgcccucacgaaaCGCAGc -3' miRNA: 3'- -GAGGCUCG--------------UGC-GGUAGUCGa-----------GCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 189518 | 0.68 | 0.840913 |
Target: 5'- gCUCCGGGCccgggcuCGCCgcgGUCGGCgucCGCGGc -3' miRNA: 3'- -GAGGCUCGu------GCGG---UAGUCGa--GCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 215160 | 0.68 | 0.840913 |
Target: 5'- --aCGAGCACcugGCCGUCcugcuGCUCGgGGAg -3' miRNA: 3'- gagGCUCGUG---CGGUAGu----CGAGCgUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 12598 | 0.68 | 0.848717 |
Target: 5'- uCUCCcGGCGCGCgGUCcGCaUgGCGGAg -3' miRNA: 3'- -GAGGcUCGUGCGgUAGuCG-AgCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 11035 | 0.68 | 0.848717 |
Target: 5'- -cCCGGGCgACcUCGUCGGCgaagUCGCAGAg -3' miRNA: 3'- gaGGCUCG-UGcGGUAGUCG----AGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 34392 | 0.68 | 0.848717 |
Target: 5'- -cCCGAucuuCACgGCCcUCAGCUCGCGGu -3' miRNA: 3'- gaGGCUc---GUG-CGGuAGUCGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 164419 | 0.68 | 0.856335 |
Target: 5'- uUCCc-GCACGCCAUgCAGgUCGCcgGGAa -3' miRNA: 3'- gAGGcuCGUGCGGUA-GUCgAGCG--UCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 143519 | 0.68 | 0.856335 |
Target: 5'- uCUCCaGGGCGCGCCuggCGGcCUCGUc-- -3' miRNA: 3'- -GAGG-CUCGUGCGGua-GUC-GAGCGucu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 155252 | 0.68 | 0.856336 |
Target: 5'- -cCCGucGCgGCGUCGaCGGCUCGCGGGa -3' miRNA: 3'- gaGGCu-CG-UGCGGUaGUCGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 37290 | 0.68 | 0.856336 |
Target: 5'- -gCCGcGGCGCGCCG-CAGCa-GCGGGa -3' miRNA: 3'- gaGGC-UCGUGCGGUaGUCGagCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 72862 | 0.68 | 0.856336 |
Target: 5'- gCUCCGGGCcgcguCGCCGUUG--UCGCGGGg -3' miRNA: 3'- -GAGGCUCGu----GCGGUAGUcgAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 126038 | 0.68 | 0.856336 |
Target: 5'- gCUCCGGGUGCaCCGUCugguaccGCUUGCGGc -3' miRNA: 3'- -GAGGCUCGUGcGGUAGu------CGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 10760 | 0.68 | 0.856336 |
Target: 5'- ---aGAGCGCGUCGUCGGCcccgcCGCGGu -3' miRNA: 3'- gaggCUCGUGCGGUAGUCGa----GCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 96768 | 0.67 | 0.86668 |
Target: 5'- gUCCGAGCgGCGCCAUgCAGaucucacacguggaUCGgGGAa -3' miRNA: 3'- gAGGCUCG-UGCGGUA-GUCg-------------AGCgUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 140680 | 0.67 | 0.870995 |
Target: 5'- aUgCGGGCcuGCGUCAUCGGCUacaGCGGc -3' miRNA: 3'- gAgGCUCG--UGCGGUAGUCGAg--CGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 203999 | 0.67 | 0.878024 |
Target: 5'- -aCCGAGUACGaCCGccucuUCGGCUucgUGCGGGc -3' miRNA: 3'- gaGGCUCGUGC-GGU-----AGUCGA---GCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 124186 | 0.67 | 0.878024 |
Target: 5'- -cCCGAGCGCGgCGUuCGGCaCGCAc- -3' miRNA: 3'- gaGGCUCGUGCgGUA-GUCGaGCGUcu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 24937 | 0.67 | 0.884174 |
Target: 5'- uUCCGAGUccacucuGCGCCAUCGGagaGCAu- -3' miRNA: 3'- gAGGCUCG-------UGCGGUAGUCgagCGUcu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 102263 | 0.67 | 0.884847 |
Target: 5'- gUCCGGGCGuCGuCCAucUCGGCUCgGCGc- -3' miRNA: 3'- gAGGCUCGU-GC-GGU--AGUCGAG-CGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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