miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 217782 0.67 0.884847
Target:  5'- -gCCGGGguCGCgGcCGGCUgGCGGAu -3'
miRNA:   3'- gaGGCUCguGCGgUaGUCGAgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 102263 0.67 0.884847
Target:  5'- gUCCGGGCGuCGuCCAucUCGGCUCgGCGc- -3'
miRNA:   3'- gAGGCUCGU-GC-GGU--AGUCGAG-CGUcu -5'
9018 3' -57.3 NC_002512.2 + 116768 0.67 0.884848
Target:  5'- uCUCCGAggagagGCACGaCGUCAGCgUCGCc-- -3'
miRNA:   3'- -GAGGCU------CGUGCgGUAGUCG-AGCGucu -5'
9018 3' -57.3 NC_002512.2 + 83248 0.67 0.884848
Target:  5'- cCUCCucgucGC-CGCCAgCAGCUgGCGGAu -3'
miRNA:   3'- -GAGGcu---CGuGCGGUaGUCGAgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 124697 0.67 0.89146
Target:  5'- aUCCGGgcGCACGCCGUCcuggGGCgcgUGCAc- -3'
miRNA:   3'- gAGGCU--CGUGCGGUAG----UCGa--GCGUcu -5'
9018 3' -57.3 NC_002512.2 + 91993 0.67 0.89146
Target:  5'- gUCCGGGUcucccgcguCGCCGgcggCGGaCUCGCGGGc -3'
miRNA:   3'- gAGGCUCGu--------GCGGUa---GUC-GAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 197804 0.67 0.897858
Target:  5'- -cCCGGGC-CGCCAUCGGCgacccccccUGcCGGAg -3'
miRNA:   3'- gaGGCUCGuGCGGUAGUCGa--------GC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 178125 0.67 0.897858
Target:  5'- cCUCCucGCucauCGUCGUCAGCgucCGCAGc -3'
miRNA:   3'- -GAGGcuCGu---GCGGUAGUCGa--GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 24840 0.67 0.897858
Target:  5'- gUCCGGGCccGCgGCCgGUCGGCg-GCGGAc -3'
miRNA:   3'- gAGGCUCG--UG-CGG-UAGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 129486 0.67 0.897858
Target:  5'- --aCGAGgACGCCGUCgccaacuggAGCUCGCu-- -3'
miRNA:   3'- gagGCUCgUGCGGUAG---------UCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 182506 0.66 0.904039
Target:  5'- gCUCCGuguccuccGCGCGCCG-CAGCgucCGguGGg -3'
miRNA:   3'- -GAGGCu-------CGUGCGGUaGUCGa--GCguCU- -5'
9018 3' -57.3 NC_002512.2 + 60847 0.66 0.904039
Target:  5'- -cCCGAGgagAUGCCGgcgCcGCUCGCGGAc -3'
miRNA:   3'- gaGGCUCg--UGCGGUa--GuCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 102337 0.66 0.904039
Target:  5'- gCUCCGguacgacaAGCGCGUCcUCGGCcUGCAGu -3'
miRNA:   3'- -GAGGC--------UCGUGCGGuAGUCGaGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 31022 0.66 0.904039
Target:  5'- -cCUGGGCaACGCCAUCGuGCaacaGCAGGc -3'
miRNA:   3'- gaGGCUCG-UGCGGUAGU-CGag--CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 193195 0.66 0.904039
Target:  5'- uCUUCGAcCGCGUCuUCGGCUCGCc-- -3'
miRNA:   3'- -GAGGCUcGUGCGGuAGUCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 226117 0.66 0.904039
Target:  5'- aCUCCGGGUcCGUCuccUCgGGCUCGCAc- -3'
miRNA:   3'- -GAGGCUCGuGCGGu--AG-UCGAGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 4734 0.66 0.904039
Target:  5'- gCUCCGGGCauGCGUCGUCgacGGCggaagagGCGGAa -3'
miRNA:   3'- -GAGGCUCG--UGCGGUAG---UCGag-----CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 101227 0.66 0.91
Target:  5'- -gCCGGGUuccgGCGCCggCAGUUCgagauGCAGAa -3'
miRNA:   3'- gaGGCUCG----UGCGGuaGUCGAG-----CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 5439 0.66 0.91
Target:  5'- -aCCGAGacCACG-CGUCGGCgCGUAGAg -3'
miRNA:   3'- gaGGCUC--GUGCgGUAGUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 135324 0.66 0.91
Target:  5'- -cCCGAGguCGgCGUCAGC-CGCGc- -3'
miRNA:   3'- gaGGCUCguGCgGUAGUCGaGCGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.