miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 4159 0.75 0.473521
Target:  5'- -aCUGAGCGaguCGCCG-CGGCUCGCGGGc -3'
miRNA:   3'- gaGGCUCGU---GCGGUaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 4734 0.66 0.904039
Target:  5'- gCUCCGGGCauGCGUCGUCgacGGCggaagagGCGGAa -3'
miRNA:   3'- -GAGGCUCG--UGCGGUAG---UCGag-----CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 5439 0.66 0.91
Target:  5'- -aCCGAGacCACG-CGUCGGCgCGUAGAg -3'
miRNA:   3'- gaGGCUC--GUGCgGUAGUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 9460 0.69 0.781682
Target:  5'- gCUCCGgcGGCugGCCGUaGGCggGCGGGc -3'
miRNA:   3'- -GAGGC--UCGugCGGUAgUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 9681 0.74 0.500317
Target:  5'- -cCCGGGC-CGCCGUCgggccccggcgggGGUUCGCGGAa -3'
miRNA:   3'- gaGGCUCGuGCGGUAG-------------UCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 10760 0.68 0.856336
Target:  5'- ---aGAGCGCGUCGUCGGCcccgcCGCGGu -3'
miRNA:   3'- gaggCUCGUGCGGUAGUCGa----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 11035 0.68 0.848717
Target:  5'- -cCCGGGCgACcUCGUCGGCgaagUCGCAGAg -3'
miRNA:   3'- gaGGCUCG-UGcGGUAGUCG----AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 12598 0.68 0.848717
Target:  5'- uCUCCcGGCGCGCgGUCcGCaUgGCGGAg -3'
miRNA:   3'- -GAGGcUCGUGCGgUAGuCG-AgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 14335 0.68 0.832931
Target:  5'- -gCCGAGgGCGCCGaCGGC-CaGCAGGa -3'
miRNA:   3'- gaGGCUCgUGCGGUaGUCGaG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 24840 0.67 0.897858
Target:  5'- gUCCGGGCccGCgGCCgGUCGGCg-GCGGAc -3'
miRNA:   3'- gAGGCUCG--UG-CGG-UAGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 24937 0.67 0.884174
Target:  5'- uUCCGAGUccacucuGCGCCAUCGGagaGCAu- -3'
miRNA:   3'- gAGGCUCG-------UGCGGUAGUCgagCGUcu -5'
9018 3' -57.3 NC_002512.2 + 25009 0.76 0.429103
Target:  5'- gUCCGAGagcuCGCCGUCGG-UCGCGGAc -3'
miRNA:   3'- gAGGCUCgu--GCGGUAGUCgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 25863 0.66 0.921253
Target:  5'- ---aGAGUuCGCCGUCGGCcCGCAcGAa -3'
miRNA:   3'- gaggCUCGuGCGGUAGUCGaGCGU-CU- -5'
9018 3' -57.3 NC_002512.2 + 27462 0.66 0.921253
Target:  5'- aCUCCGcgGGuCACGCCAcuguUCcGCgCGCGGGa -3'
miRNA:   3'- -GAGGC--UC-GUGCGGU----AGuCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 31022 0.66 0.904039
Target:  5'- -cCUGGGCaACGCCAUCGuGCaacaGCAGGc -3'
miRNA:   3'- gaGGCUCG-UGCGGUAGU-CGag--CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 34392 0.68 0.848717
Target:  5'- -cCCGAucuuCACgGCCcUCAGCUCGCGGu -3'
miRNA:   3'- gaGGCUc---GUG-CGGuAGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 37290 0.68 0.856336
Target:  5'- -gCCGcGGCGCGCCG-CAGCa-GCGGGa -3'
miRNA:   3'- gaGGC-UCGUGCGGUaGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 37625 0.72 0.647565
Target:  5'- -cCCGAGCACGCUcgcguagaccagAUCGGCggaacaucucUCGCGGGc -3'
miRNA:   3'- gaGGCUCGUGCGG------------UAGUCG----------AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 39809 0.66 0.915738
Target:  5'- -gCCGAGCcCGCUgaccggccgcgGcCAGCUCGUGGAu -3'
miRNA:   3'- gaGGCUCGuGCGG-----------UaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 40361 0.66 0.921253
Target:  5'- cCUCgGGGCcuGCGCCGcUCGGuCUC-CAGAu -3'
miRNA:   3'- -GAGgCUCG--UGCGGU-AGUC-GAGcGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.