miRNA display CGI


Results 21 - 40 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 55795 0.72 0.617782
Target:  5'- uUCCGAGCccuaucgaGCGCCAUCcGCgcggCGguGAa -3'
miRNA:   3'- gAGGCUCG--------UGCGGUAGuCGa---GCguCU- -5'
9018 3' -57.3 NC_002512.2 + 58940 0.66 0.91
Target:  5'- -aUCGAGgGCagaGUCAGCUCGUAGAc -3'
miRNA:   3'- gaGGCUCgUGcggUAGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 60847 0.66 0.904039
Target:  5'- -cCCGAGgagAUGCCGgcgCcGCUCGCGGAc -3'
miRNA:   3'- gaGGCUCg--UGCGGUa--GuCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 69886 0.71 0.700768
Target:  5'- gUUCG-GCAcCGCCAUCAGCUCcucguagcacugguaGCAGGu -3'
miRNA:   3'- gAGGCuCGU-GCGGUAGUCGAG---------------CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 72862 0.68 0.856336
Target:  5'- gCUCCGGGCcgcguCGCCGUUG--UCGCGGGg -3'
miRNA:   3'- -GAGGCUCGu----GCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 74374 0.7 0.735435
Target:  5'- --gUGAGCACGCCGUCG--UCGCAGc -3'
miRNA:   3'- gagGCUCGUGCGGUAGUcgAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 75753 0.71 0.696866
Target:  5'- -aCCGAGCGCG-CGUCGGagacCGCGGAg -3'
miRNA:   3'- gaGGCUCGUGCgGUAGUCga--GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 77581 0.76 0.420516
Target:  5'- gUCCGAGcCACGCCGagCGGUcccUCGCGGAu -3'
miRNA:   3'- gAGGCUC-GUGCGGUa-GUCG---AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 82033 0.66 0.91
Target:  5'- gUCgGGGuCGCGCCggCGGCggUCGCGGc -3'
miRNA:   3'- gAGgCUC-GUGCGGuaGUCG--AGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 82138 0.7 0.754246
Target:  5'- -gCUGAGCGCGUC--CAGCUUGCGGu -3'
miRNA:   3'- gaGGCUCGUGCGGuaGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 83248 0.67 0.884848
Target:  5'- cCUCCucgucGC-CGCCAgCAGCUgGCGGAu -3'
miRNA:   3'- -GAGGcu---CGuGCGGUaGUCGAgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 83809 0.69 0.763504
Target:  5'- -gUCGGGCGCGCCGgcggcggCGGCUC-CGGGc -3'
miRNA:   3'- gaGGCUCGUGCGGUa------GUCGAGcGUCU- -5'
9018 3' -57.3 NC_002512.2 + 84707 0.68 0.832931
Target:  5'- aCUCCGuGCGCGCgCAguacugcaggaUCcGCUCGCGcGAc -3'
miRNA:   3'- -GAGGCuCGUGCG-GU-----------AGuCGAGCGU-CU- -5'
9018 3' -57.3 NC_002512.2 + 91908 0.66 0.926542
Target:  5'- uCUCCuggggcggcGGCGCGCCGUCGGCg-GCcGAc -3'
miRNA:   3'- -GAGGc--------UCGUGCGGUAGUCGagCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 91993 0.67 0.89146
Target:  5'- gUCCGGGUcucccgcguCGCCGgcggCGGaCUCGCGGGc -3'
miRNA:   3'- gAGGCUCGu--------GCGGUa---GUC-GAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 94681 0.69 0.762583
Target:  5'- uCUCCG-GCGCGCagcugcccucgugCGaCAGCUCGCGGu -3'
miRNA:   3'- -GAGGCuCGUGCG-------------GUaGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 96768 0.67 0.86668
Target:  5'- gUCCGAGCgGCGCCAUgCAGaucucacacguggaUCGgGGAa -3'
miRNA:   3'- gAGGCUCG-UGCGGUA-GUCg-------------AGCgUCU- -5'
9018 3' -57.3 NC_002512.2 + 101227 0.66 0.91
Target:  5'- -gCCGGGUuccgGCGCCggCAGUUCgagauGCAGAa -3'
miRNA:   3'- gaGGCUCG----UGCGGuaGUCGAG-----CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 102263 0.67 0.884847
Target:  5'- gUCCGGGCGuCGuCCAucUCGGCUCgGCGc- -3'
miRNA:   3'- gAGGCUCGU-GC-GGU--AGUCGAG-CGUcu -5'
9018 3' -57.3 NC_002512.2 + 102337 0.66 0.904039
Target:  5'- gCUCCGguacgacaAGCGCGUCcUCGGCcUGCAGu -3'
miRNA:   3'- -GAGGC--------UCGUGCGGuAGUCGaGCGUCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.