miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 112193 0.69 0.807981
Target:  5'- -gCCGcaGGUGCGCCAcgCAGCUCGUcGAc -3'
miRNA:   3'- gaGGC--UCGUGCGGUa-GUCGAGCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 113198 0.71 0.696866
Target:  5'- uUCCaGAGCgGCGUCGgccagCGGCUCGCGGu -3'
miRNA:   3'- gAGG-CUCG-UGCGGUa----GUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 114420 0.68 0.832931
Target:  5'- cCUgCGAGCucuGCGCCAgcCGGUUCGCGuGAu -3'
miRNA:   3'- -GAgGCUCG---UGCGGUa-GUCGAGCGU-CU- -5'
9018 3' -57.3 NC_002512.2 + 115467 0.68 0.832931
Target:  5'- -aCCG-GCugGCgCAg-AGCUCGCAGGc -3'
miRNA:   3'- gaGGCuCGugCG-GUagUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 116768 0.67 0.884848
Target:  5'- uCUCCGAggagagGCACGaCGUCAGCgUCGCc-- -3'
miRNA:   3'- -GAGGCU------CGUGCgGUAGUCG-AGCGucu -5'
9018 3' -57.3 NC_002512.2 + 116988 0.73 0.578246
Target:  5'- gUCCGGGCGgGCCGaCGGCcgcaCGCAGGg -3'
miRNA:   3'- gAGGCUCGUgCGGUaGUCGa---GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 118070 0.66 0.921253
Target:  5'- aCUCCGcggagggggcGGCuccgGCGCCggCGGCgaccgCGCGGAc -3'
miRNA:   3'- -GAGGC----------UCG----UGCGGuaGUCGa----GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 120278 0.66 0.91
Target:  5'- cCUCCGAGUucaGCGUgaugaaCGUCGGCUugUGCAGc -3'
miRNA:   3'- -GAGGCUCG---UGCG------GUAGUCGA--GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 120899 0.66 0.921253
Target:  5'- cCUCCGucGCcCGCUucuUCAGUUCGCuGGc -3'
miRNA:   3'- -GAGGCu-CGuGCGGu--AGUCGAGCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 123932 0.72 0.647565
Target:  5'- --gCGGGCugGCCGUCAGaCUCGUg-- -3'
miRNA:   3'- gagGCUCGugCGGUAGUC-GAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 124186 0.67 0.878024
Target:  5'- -cCCGAGCGCGgCGUuCGGCaCGCAc- -3'
miRNA:   3'- gaGGCUCGUGCgGUA-GUCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 124697 0.67 0.89146
Target:  5'- aUCCGGgcGCACGCCGUCcuggGGCgcgUGCAc- -3'
miRNA:   3'- gAGGCU--CGUGCGGUAG----UCGa--GCGUcu -5'
9018 3' -57.3 NC_002512.2 + 126038 0.68 0.856336
Target:  5'- gCUCCGGGUGCaCCGUCugguaccGCUUGCGGc -3'
miRNA:   3'- -GAGGCUCGUGcGGUAGu------CGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 128509 0.7 0.715321
Target:  5'- gCUCCGAcgaGCACGUCAUCGucuccccGUUCGUGGGg -3'
miRNA:   3'- -GAGGCU---CGUGCGGUAGU-------CGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 129486 0.67 0.897858
Target:  5'- --aCGAGgACGCCGUCgccaacuggAGCUCGCu-- -3'
miRNA:   3'- gagGCUCgUGCGGUAG---------UCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 133143 0.69 0.802822
Target:  5'- -cUCGAGCACguagcaggcggcggaGCCAUCGcGCUCGCGa- -3'
miRNA:   3'- gaGGCUCGUG---------------CGGUAGU-CGAGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 135324 0.66 0.91
Target:  5'- -cCCGAGguCGgCGUCAGC-CGCGc- -3'
miRNA:   3'- gaGGCUCguGCgGUAGUCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 139261 0.7 0.754246
Target:  5'- -gCCGGGuCGCGCCGccCGGCgCGCGGGg -3'
miRNA:   3'- gaGGCUC-GUGCGGUa-GUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 139323 0.68 0.824776
Target:  5'- cCUCuUGAGCACGgCGUCuuucgaUCGCAGAa -3'
miRNA:   3'- -GAG-GCUCGUGCgGUAGucg---AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 140680 0.67 0.870995
Target:  5'- aUgCGGGCcuGCGUCAUCGGCUacaGCGGc -3'
miRNA:   3'- gAgGCUCG--UGCGGUAGUCGAg--CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.