miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 193195 0.66 0.904039
Target:  5'- uCUUCGAcCGCGUCuUCGGCUCGCc-- -3'
miRNA:   3'- -GAGGCUcGUGCGGuAGUCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 195839 0.69 0.772651
Target:  5'- -gUgGGGCACGCC-UCGagcaaccggcGCUCGCGGAa -3'
miRNA:   3'- gaGgCUCGUGCGGuAGU----------CGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 196744 0.68 0.824777
Target:  5'- uUCCGAGUccgugucagGCGCCGUCuGGaaaaauuaUCGCGGAc -3'
miRNA:   3'- gAGGCUCG---------UGCGGUAG-UCg-------AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 197804 0.67 0.897858
Target:  5'- -cCCGGGC-CGCCAUCGGCgacccccccUGcCGGAg -3'
miRNA:   3'- gaGGCUCGuGCGGUAGUCGa--------GC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 198619 0.68 0.836944
Target:  5'- aCUCCGGGCacacguacacguccGCGuCCAUCAGCgcccucacgaaaCGCAGc -3'
miRNA:   3'- -GAGGCUCG--------------UGC-GGUAGUCGa-----------GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 201624 0.7 0.735435
Target:  5'- -gCCGAGCgguagGCGCCGUCGuaCUCGCGGc -3'
miRNA:   3'- gaGGCUCG-----UGCGGUAGUc-GAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 201725 0.72 0.607866
Target:  5'- aUCUGAGCACGggaCGUCuuuCUCGCAGAu -3'
miRNA:   3'- gAGGCUCGUGCg--GUAGuc-GAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 202027 0.69 0.799354
Target:  5'- -gCCGGGUccccCGCCGgucCGGCUCGCGGu -3'
miRNA:   3'- gaGGCUCGu---GCGGUa--GUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 203999 0.67 0.878024
Target:  5'- -aCCGAGUACGaCCGccucuUCGGCUucgUGCGGGc -3'
miRNA:   3'- gaGGCUCGUGC-GGU-----AGUCGA---GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 214177 0.66 0.926542
Target:  5'- -gUCGAGCcCGUCAUCG--UCGCGGAg -3'
miRNA:   3'- gaGGCUCGuGCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 215160 0.68 0.840913
Target:  5'- --aCGAGCACcugGCCGUCcugcuGCUCGgGGAg -3'
miRNA:   3'- gagGCUCGUG---CGGUAGu----CGAGCgUCU- -5'
9018 3' -57.3 NC_002512.2 + 216424 0.71 0.687075
Target:  5'- gUCCGGGgACGCCA--GGCUCGCc-- -3'
miRNA:   3'- gAGGCUCgUGCGGUagUCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 217782 0.67 0.884847
Target:  5'- -gCCGGGguCGCgGcCGGCUgGCGGAu -3'
miRNA:   3'- gaGGCUCguGCGgUaGUCGAgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 224660 0.66 0.924453
Target:  5'- -cCCGAGUucgacuuucccgcCGCCGUCGGCUggccCGCGGu -3'
miRNA:   3'- gaGGCUCGu------------GCGGUAGUCGA----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 226117 0.66 0.904039
Target:  5'- aCUCCGGGUcCGUCuccUCgGGCUCGCAc- -3'
miRNA:   3'- -GAGGCUCGuGCGGu--AG-UCGAGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 226681 0.69 0.772651
Target:  5'- uCUCUGAGCGCcggGCCGUC-GCcCGCGGc -3'
miRNA:   3'- -GAGGCUCGUG---CGGUAGuCGaGCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.