miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 177122 0.67 0.884847
Target:  5'- gUCCGGGUGCGCCAgcagGGCcCGCGc- -3'
miRNA:   3'- gAGGCUCGUGCGGUag--UCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 169758 1.09 0.003315
Target:  5'- gCUCCGAGCACGCCAUCAGCUCGCAGAg -3'
miRNA:   3'- -GAGGCUCGUGCGGUAGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 167508 0.72 0.607866
Target:  5'- gUCCGAGgGCGCCAUgCGGCUCuCcGAg -3'
miRNA:   3'- gAGGCUCgUGCGGUA-GUCGAGcGuCU- -5'
9018 3' -57.3 NC_002512.2 + 166017 0.66 0.926542
Target:  5'- gCUCCGGGgACGCguUCGGCggcCGUuccGGGg -3'
miRNA:   3'- -GAGGCUCgUGCGguAGUCGa--GCG---UCU- -5'
9018 3' -57.3 NC_002512.2 + 165923 0.66 0.91
Target:  5'- uUCCGAGCugGUUugguGUCcGCUUGcCAGGu -3'
miRNA:   3'- gAGGCUCGugCGG----UAGuCGAGC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 164419 0.68 0.856335
Target:  5'- uUCCc-GCACGCCAUgCAGgUCGCcgGGAa -3'
miRNA:   3'- gAGGcuCGUGCGGUA-GUCgAGCG--UCU- -5'
9018 3' -57.3 NC_002512.2 + 158228 0.76 0.412035
Target:  5'- gUCCGGGC-CGCCcaaguUCGGCUCGguGGc -3'
miRNA:   3'- gAGGCUCGuGCGGu----AGUCGAGCguCU- -5'
9018 3' -57.3 NC_002512.2 + 156550 0.66 0.915738
Target:  5'- uUCgGAGCGCGUgA-CGGCUgaGCGGAa -3'
miRNA:   3'- gAGgCUCGUGCGgUaGUCGAg-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 156215 0.68 0.832931
Target:  5'- -gCCGAGCugGCCuUCAGCuacUCGUc-- -3'
miRNA:   3'- gaGGCUCGugCGGuAGUCG---AGCGucu -5'
9018 3' -57.3 NC_002512.2 + 155252 0.68 0.856336
Target:  5'- -cCCGucGCgGCGUCGaCGGCUCGCGGGa -3'
miRNA:   3'- gaGGCu-CG-UGCGGUaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 154691 0.68 0.816458
Target:  5'- gCUCCGAGCG-GCCGUCcGGCgucgaGCGGc -3'
miRNA:   3'- -GAGGCUCGUgCGGUAG-UCGag---CGUCu -5'
9018 3' -57.3 NC_002512.2 + 154139 0.66 0.915738
Target:  5'- uCUCCGAcGCGCGCUcgGUCGccucccGUUCgGCGGAc -3'
miRNA:   3'- -GAGGCU-CGUGCGG--UAGU------CGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 152359 0.7 0.744887
Target:  5'- cCUCCGAGCACggagaccgGCCGU-GGCcggUCGUAGAc -3'
miRNA:   3'- -GAGGCUCGUG--------CGGUAgUCG---AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 144115 0.71 0.696866
Target:  5'- cCUCCGAGuCGCggucuaucucgGCCAggUCGGC-CGCGGAg -3'
miRNA:   3'- -GAGGCUC-GUG-----------CGGU--AGUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 143519 0.68 0.856335
Target:  5'- uCUCCaGGGCGCGCCuggCGGcCUCGUc-- -3'
miRNA:   3'- -GAGG-CUCGUGCGGua-GUC-GAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 142361 0.72 0.623738
Target:  5'- -gCCGAGaacggagauaccCGCCAUCGGCUCcGCGGAg -3'
miRNA:   3'- gaGGCUCgu----------GCGGUAGUCGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 140680 0.67 0.870995
Target:  5'- aUgCGGGCcuGCGUCAUCGGCUacaGCGGc -3'
miRNA:   3'- gAgGCUCG--UGCGGUAGUCGAg--CGUCu -5'
9018 3' -57.3 NC_002512.2 + 139323 0.68 0.824776
Target:  5'- cCUCuUGAGCACGgCGUCuuucgaUCGCAGAa -3'
miRNA:   3'- -GAG-GCUCGUGCgGUAGucg---AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 139261 0.7 0.754246
Target:  5'- -gCCGGGuCGCGCCGccCGGCgCGCGGGg -3'
miRNA:   3'- gaGGCUC-GUGCGGUa-GUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 135324 0.66 0.91
Target:  5'- -cCCGAGguCGgCGUCAGC-CGCGc- -3'
miRNA:   3'- gaGGCUCguGCgGUAGUCGaGCGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.