Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9018 | 3' | -57.3 | NC_002512.2 | + | 14335 | 0.68 | 0.832931 |
Target: 5'- -gCCGAGgGCGCCGaCGGC-CaGCAGGa -3' miRNA: 3'- gaGGCUCgUGCGGUaGUCGaG-CGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 74374 | 0.7 | 0.735435 |
Target: 5'- --gUGAGCACGCCGUCG--UCGCAGc -3' miRNA: 3'- gagGCUCGUGCGGUAGUcgAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 82138 | 0.7 | 0.754246 |
Target: 5'- -gCUGAGCGCGUC--CAGCUUGCGGu -3' miRNA: 3'- gaGGCUCGUGCGGuaGUCGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 139261 | 0.7 | 0.754246 |
Target: 5'- -gCCGGGuCGCGCCGccCGGCgCGCGGGg -3' miRNA: 3'- gaGGCUC-GUGCGGUa-GUCGaGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 94681 | 0.69 | 0.762583 |
Target: 5'- uCUCCG-GCGCGCagcugcccucgugCGaCAGCUCGCGGu -3' miRNA: 3'- -GAGGCuCGUGCG-------------GUaGUCGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 83809 | 0.69 | 0.763504 |
Target: 5'- -gUCGGGCGCGCCGgcggcggCGGCUC-CGGGc -3' miRNA: 3'- gaGGCUCGUGCGGUa------GUCGAGcGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 9460 | 0.69 | 0.781682 |
Target: 5'- gCUCCGgcGGCugGCCGUaGGCggGCGGGc -3' miRNA: 3'- -GAGGC--UCGugCGGUAgUCGagCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 112193 | 0.69 | 0.807981 |
Target: 5'- -gCCGcaGGUGCGCCAcgCAGCUCGUcGAc -3' miRNA: 3'- gaGGC--UCGUGCGGUa-GUCGAGCGuCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 196744 | 0.68 | 0.824777 |
Target: 5'- uUCCGAGUccgugucagGCGCCGUCuGGaaaaauuaUCGCGGAc -3' miRNA: 3'- gAGGCUCG---------UGCGGUAG-UCg-------AGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 128509 | 0.7 | 0.715321 |
Target: 5'- gCUCCGAcgaGCACGUCAUCGucuccccGUUCGUGGGg -3' miRNA: 3'- -GAGGCU---CGUGCGGUAGU-------CGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 69886 | 0.71 | 0.700768 |
Target: 5'- gUUCG-GCAcCGCCAUCAGCUCcucguagcacugguaGCAGGu -3' miRNA: 3'- gAGGCuCGU-GCGGUAGUCGAG---------------CGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 113198 | 0.71 | 0.696866 |
Target: 5'- uUCCaGAGCgGCGUCGgccagCGGCUCGCGGu -3' miRNA: 3'- gAGG-CUCG-UGCGGUa----GUCGAGCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 4159 | 0.75 | 0.473521 |
Target: 5'- -aCUGAGCGaguCGCCG-CGGCUCGCGGGc -3' miRNA: 3'- gaGGCUCGU---GCGGUaGUCGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 9681 | 0.74 | 0.500317 |
Target: 5'- -cCCGGGC-CGCCGUCgggccccggcgggGGUUCGCGGAa -3' miRNA: 3'- gaGGCUCGuGCGGUAG-------------UCGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 116988 | 0.73 | 0.578246 |
Target: 5'- gUCCGGGCGgGCCGaCGGCcgcaCGCAGGg -3' miRNA: 3'- gAGGCUCGUgCGGUaGUCGa---GCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 201725 | 0.72 | 0.607866 |
Target: 5'- aUCUGAGCACGggaCGUCuuuCUCGCAGAu -3' miRNA: 3'- gAGGCUCGUGCg--GUAGuc-GAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 55795 | 0.72 | 0.617782 |
Target: 5'- uUCCGAGCccuaucgaGCGCCAUCcGCgcggCGguGAa -3' miRNA: 3'- gAGGCUCG--------UGCGGUAGuCGa---GCguCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 142361 | 0.72 | 0.623738 |
Target: 5'- -gCCGAGaacggagauaccCGCCAUCGGCUCcGCGGAg -3' miRNA: 3'- gaGGCUCgu----------GCGGUAGUCGAG-CGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 37625 | 0.72 | 0.647565 |
Target: 5'- -cCCGAGCACGCUcgcguagaccagAUCGGCggaacaucucUCGCGGGc -3' miRNA: 3'- gaGGCUCGUGCGG------------UAGUCG----------AGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 123932 | 0.72 | 0.647565 |
Target: 5'- --gCGGGCugGCCGUCAGaCUCGUg-- -3' miRNA: 3'- gagGCUCGugCGGUAGUC-GAGCGucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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