Results 61 - 80 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9018 | 3' | -57.3 | NC_002512.2 | + | 215160 | 0.68 | 0.840913 |
Target: 5'- --aCGAGCACcugGCCGUCcugcuGCUCGgGGAg -3' miRNA: 3'- gagGCUCGUG---CGGUAGu----CGAGCgUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 189518 | 0.68 | 0.840913 |
Target: 5'- gCUCCGGGCccgggcuCGCCgcgGUCGGCgucCGCGGc -3' miRNA: 3'- -GAGGCUCGu------GCGG---UAGUCGa--GCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 198619 | 0.68 | 0.836944 |
Target: 5'- aCUCCGGGCacacguacacguccGCGuCCAUCAGCgcccucacgaaaCGCAGc -3' miRNA: 3'- -GAGGCUCG--------------UGC-GGUAGUCGa-----------GCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 156215 | 0.68 | 0.832931 |
Target: 5'- -gCCGAGCugGCCuUCAGCuacUCGUc-- -3' miRNA: 3'- gaGGCUCGugCGGuAGUCG---AGCGucu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 115467 | 0.68 | 0.832931 |
Target: 5'- -aCCG-GCugGCgCAg-AGCUCGCAGGc -3' miRNA: 3'- gaGGCuCGugCG-GUagUCGAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 139323 | 0.68 | 0.824776 |
Target: 5'- cCUCuUGAGCACGgCGUCuuucgaUCGCAGAa -3' miRNA: 3'- -GAG-GCUCGUGCgGUAGucg---AGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 102263 | 0.67 | 0.884847 |
Target: 5'- gUCCGGGCGuCGuCCAucUCGGCUCgGCGc- -3' miRNA: 3'- gAGGCUCGU-GC-GGU--AGUCGAG-CGUcu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 177122 | 0.67 | 0.884847 |
Target: 5'- gUCCGGGUGCGCCAgcagGGCcCGCGc- -3' miRNA: 3'- gAGGCUCGUGCGGUag--UCGaGCGUcu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 217782 | 0.67 | 0.884847 |
Target: 5'- -gCCGGGguCGCgGcCGGCUgGCGGAu -3' miRNA: 3'- gaGGCUCguGCGgUaGUCGAgCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 214177 | 0.66 | 0.926542 |
Target: 5'- -gUCGAGCcCGUCAUCG--UCGCGGAg -3' miRNA: 3'- gaGGCUCGuGCGGUAGUcgAGCGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 224660 | 0.66 | 0.924453 |
Target: 5'- -cCCGAGUucgacuuucccgcCGCCGUCGGCUggccCGCGGu -3' miRNA: 3'- gaGGCUCGu------------GCGGUAGUCGA----GCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 40361 | 0.66 | 0.921253 |
Target: 5'- cCUCgGGGCcuGCGCCGcUCGGuCUC-CAGAu -3' miRNA: 3'- -GAGgCUCG--UGCGGU-AGUC-GAGcGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 101227 | 0.66 | 0.91 |
Target: 5'- -gCCGGGUuccgGCGCCggCAGUUCgagauGCAGAa -3' miRNA: 3'- gaGGCUCG----UGCGGuaGUCGAG-----CGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 193195 | 0.66 | 0.904039 |
Target: 5'- uCUUCGAcCGCGUCuUCGGCUCGCc-- -3' miRNA: 3'- -GAGGCUcGUGCGGuAGUCGAGCGucu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 182506 | 0.66 | 0.904039 |
Target: 5'- gCUCCGuguccuccGCGCGCCG-CAGCgucCGguGGg -3' miRNA: 3'- -GAGGCu-------CGUGCGGUaGUCGa--GCguCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 226117 | 0.66 | 0.904039 |
Target: 5'- aCUCCGGGUcCGUCuccUCgGGCUCGCAc- -3' miRNA: 3'- -GAGGCUCGuGCGGu--AG-UCGAGCGUcu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 4734 | 0.66 | 0.904039 |
Target: 5'- gCUCCGGGCauGCGUCGUCgacGGCggaagagGCGGAa -3' miRNA: 3'- -GAGGCUCG--UGCGGUAG---UCGag-----CGUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 197804 | 0.67 | 0.897858 |
Target: 5'- -cCCGGGC-CGCCAUCGGCgacccccccUGcCGGAg -3' miRNA: 3'- gaGGCUCGuGCGGUAGUCGa--------GC-GUCU- -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 178125 | 0.67 | 0.897858 |
Target: 5'- cCUCCucGCucauCGUCGUCAGCgucCGCAGc -3' miRNA: 3'- -GAGGcuCGu---GCGGUAGUCGa--GCGUCu -5' |
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9018 | 3' | -57.3 | NC_002512.2 | + | 124697 | 0.67 | 0.89146 |
Target: 5'- aUCCGGgcGCACGCCGUCcuggGGCgcgUGCAc- -3' miRNA: 3'- gAGGCU--CGUGCGGUAG----UCGa--GCGUcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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