miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 166017 0.66 0.926542
Target:  5'- gCUCCGGGgACGCguUCGGCggcCGUuccGGGg -3'
miRNA:   3'- -GAGGCUCgUGCGguAGUCGa--GCG---UCU- -5'
9018 3' -57.3 NC_002512.2 + 203999 0.67 0.878024
Target:  5'- -aCCGAGUACGaCCGccucuUCGGCUucgUGCGGGc -3'
miRNA:   3'- gaGGCUCGUGC-GGU-----AGUCGA---GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 164419 0.68 0.856335
Target:  5'- uUCCc-GCACGCCAUgCAGgUCGCcgGGAa -3'
miRNA:   3'- gAGGcuCGUGCGGUA-GUCgAGCG--UCU- -5'
9018 3' -57.3 NC_002512.2 + 169758 1.09 0.003315
Target:  5'- gCUCCGAGCACGCCAUCAGCUCGCAGAg -3'
miRNA:   3'- -GAGGCUCGUGCGGUAGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 101227 0.66 0.91
Target:  5'- -gCCGGGUuccgGCGCCggCAGUUCgagauGCAGAa -3'
miRNA:   3'- gaGGCUCG----UGCGGuaGUCGAG-----CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 193195 0.66 0.904039
Target:  5'- uCUUCGAcCGCGUCuUCGGCUCGCc-- -3'
miRNA:   3'- -GAGGCUcGUGCGGuAGUCGAGCGucu -5'
9018 3' -57.3 NC_002512.2 + 226117 0.66 0.904039
Target:  5'- aCUCCGGGUcCGUCuccUCgGGCUCGCAc- -3'
miRNA:   3'- -GAGGCUCGuGCGGu--AG-UCGAGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 4734 0.66 0.904039
Target:  5'- gCUCCGGGCauGCGUCGUCgacGGCggaagagGCGGAa -3'
miRNA:   3'- -GAGGCUCG--UGCGGUAG---UCGag-----CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 124697 0.67 0.89146
Target:  5'- aUCCGGgcGCACGCCGUCcuggGGCgcgUGCAc- -3'
miRNA:   3'- gAGGCU--CGUGCGGUAG----UCGa--GCGUcu -5'
9018 3' -57.3 NC_002512.2 + 124186 0.67 0.878024
Target:  5'- -cCCGAGCGCGgCGUuCGGCaCGCAc- -3'
miRNA:   3'- gaGGCUCGUGCgGUA-GUCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 177122 0.67 0.884847
Target:  5'- gUCCGGGUGCGCCAgcagGGCcCGCGc- -3'
miRNA:   3'- gAGGCUCGUGCGGUag--UCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 178125 0.67 0.897858
Target:  5'- cCUCCucGCucauCGUCGUCAGCgucCGCAGc -3'
miRNA:   3'- -GAGGcuCGu---GCGGUAGUCGa--GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 214177 0.66 0.926542
Target:  5'- -gUCGAGCcCGUCAUCG--UCGCGGAg -3'
miRNA:   3'- gaGGCUCGuGCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 102263 0.67 0.884847
Target:  5'- gUCCGGGCGuCGuCCAucUCGGCUCgGCGc- -3'
miRNA:   3'- gAGGCUCGU-GC-GGU--AGUCGAG-CGUcu -5'
9018 3' -57.3 NC_002512.2 + 224660 0.66 0.924453
Target:  5'- -cCCGAGUucgacuuucccgcCGCCGUCGGCUggccCGCGGu -3'
miRNA:   3'- gaGGCUCGu------------GCGGUAGUCGA----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 197804 0.67 0.897858
Target:  5'- -cCCGGGC-CGCCAUCGGCgacccccccUGcCGGAg -3'
miRNA:   3'- gaGGCUCGuGCGGUAGUCGa--------GC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 24937 0.67 0.884174
Target:  5'- uUCCGAGUccacucuGCGCCAUCGGagaGCAu- -3'
miRNA:   3'- gAGGCUCG-------UGCGGUAGUCgagCGUcu -5'
9018 3' -57.3 NC_002512.2 + 96768 0.67 0.86668
Target:  5'- gUCCGAGCgGCGCCAUgCAGaucucacacguggaUCGgGGAa -3'
miRNA:   3'- gAGGCUCG-UGCGGUA-GUCg-------------AGCgUCU- -5'
9018 3' -57.3 NC_002512.2 + 40361 0.66 0.921253
Target:  5'- cCUCgGGGCcuGCGCCGcUCGGuCUC-CAGAu -3'
miRNA:   3'- -GAGgCUCG--UGCGGU-AGUC-GAGcGUCU- -5'
9018 3' -57.3 NC_002512.2 + 182506 0.66 0.904039
Target:  5'- gCUCCGuguccuccGCGCGCCG-CAGCgucCGguGGg -3'
miRNA:   3'- -GAGGCu-------CGUGCGGUaGUCGa--GCguCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.