miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 215160 0.68 0.840913
Target:  5'- --aCGAGCACcugGCCGUCcugcuGCUCGgGGAg -3'
miRNA:   3'- gagGCUCGUG---CGGUAGu----CGAGCgUCU- -5'
9018 3' -57.3 NC_002512.2 + 96768 0.67 0.86668
Target:  5'- gUCCGAGCgGCGCCAUgCAGaucucacacguggaUCGgGGAa -3'
miRNA:   3'- gAGGCUCG-UGCGGUA-GUCg-------------AGCgUCU- -5'
9018 3' -57.3 NC_002512.2 + 37290 0.68 0.856336
Target:  5'- -gCCGcGGCGCGCCG-CAGCa-GCGGGa -3'
miRNA:   3'- gaGGC-UCGUGCGGUaGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 10760 0.68 0.856336
Target:  5'- ---aGAGCGCGUCGUCGGCcccgcCGCGGu -3'
miRNA:   3'- gaggCUCGUGCGGUAGUCGa----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 34392 0.68 0.848717
Target:  5'- -cCCGAucuuCACgGCCcUCAGCUCGCGGu -3'
miRNA:   3'- gaGGCUc---GUG-CGGuAGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 12598 0.68 0.848717
Target:  5'- uCUCCcGGCGCGCgGUCcGCaUgGCGGAg -3'
miRNA:   3'- -GAGGcUCGUGCGgUAGuCG-AgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 72862 0.68 0.856336
Target:  5'- gCUCCGGGCcgcguCGCCGUUG--UCGCGGGg -3'
miRNA:   3'- -GAGGCUCGu----GCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 126038 0.68 0.856336
Target:  5'- gCUCCGGGUGCaCCGUCugguaccGCUUGCGGc -3'
miRNA:   3'- -GAGGCUCGUGcGGUAGu------CGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 155252 0.68 0.856336
Target:  5'- -cCCGucGCgGCGUCGaCGGCUCGCGGGa -3'
miRNA:   3'- gaGGCu-CG-UGCGGUaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 120899 0.66 0.921253
Target:  5'- cCUCCGucGCcCGCUucuUCAGUUCGCuGGc -3'
miRNA:   3'- -GAGGCu-CGuGCGGu--AGUCGAGCGuCU- -5'
9018 3' -57.3 NC_002512.2 + 118070 0.66 0.921253
Target:  5'- aCUCCGcggagggggcGGCuccgGCGCCggCGGCgaccgCGCGGAc -3'
miRNA:   3'- -GAGGC----------UCG----UGCGGuaGUCGa----GCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 27462 0.66 0.921253
Target:  5'- aCUCCGcgGGuCACGCCAcuguUCcGCgCGCGGGa -3'
miRNA:   3'- -GAGGC--UC-GUGCGGU----AGuCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 11035 0.68 0.848717
Target:  5'- -cCCGGGCgACcUCGUCGGCgaagUCGCAGAg -3'
miRNA:   3'- gaGGCUCG-UGcGGUAGUCG----AGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 139261 0.7 0.754246
Target:  5'- -gCCGGGuCGCGCCGccCGGCgCGCGGGg -3'
miRNA:   3'- gaGGCUC-GUGCGGUa-GUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 82138 0.7 0.754246
Target:  5'- -gCUGAGCGCGUC--CAGCUUGCGGu -3'
miRNA:   3'- gaGGCUCGUGCGGuaGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 74374 0.7 0.735435
Target:  5'- --gUGAGCACGCCGUCG--UCGCAGc -3'
miRNA:   3'- gagGCUCGUGCGGUAGUcgAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 142361 0.72 0.623738
Target:  5'- -gCCGAGaacggagauaccCGCCAUCGGCUCcGCGGAg -3'
miRNA:   3'- gaGGCUCgu----------GCGGUAGUCGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 154139 0.66 0.915738
Target:  5'- uCUCCGAcGCGCGCUcgGUCGccucccGUUCgGCGGAc -3'
miRNA:   3'- -GAGGCU-CGUGCGG--UAGU------CGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 156550 0.66 0.915738
Target:  5'- uUCgGAGCGCGUgA-CGGCUgaGCGGAa -3'
miRNA:   3'- gAGgCUCGUGCGgUaGUCGAg-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 25863 0.66 0.921253
Target:  5'- ---aGAGUuCGCCGUCGGCcCGCAcGAa -3'
miRNA:   3'- gaggCUCGuGCGGUAGUCGaGCGU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.