miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 113198 0.71 0.696866
Target:  5'- uUCCaGAGCgGCGUCGgccagCGGCUCGCGGu -3'
miRNA:   3'- gAGG-CUCG-UGCGGUa----GUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 142361 0.72 0.623738
Target:  5'- -gCCGAGaacggagauaccCGCCAUCGGCUCcGCGGAg -3'
miRNA:   3'- gaGGCUCgu----------GCGGUAGUCGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 55795 0.72 0.617782
Target:  5'- uUCCGAGCccuaucgaGCGCCAUCcGCgcggCGguGAa -3'
miRNA:   3'- gAGGCUCG--------UGCGGUAGuCGa---GCguCU- -5'
9018 3' -57.3 NC_002512.2 + 201725 0.72 0.607866
Target:  5'- aUCUGAGCACGggaCGUCuuuCUCGCAGAu -3'
miRNA:   3'- gAGGCUCGUGCg--GUAGuc-GAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 34392 0.68 0.848717
Target:  5'- -cCCGAucuuCACgGCCcUCAGCUCGCGGu -3'
miRNA:   3'- gaGGCUc---GUG-CGGuAGUCGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 10760 0.68 0.856336
Target:  5'- ---aGAGCGCGUCGUCGGCcccgcCGCGGu -3'
miRNA:   3'- gaggCUCGUGCGGUAGUCGa----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 39809 0.66 0.915738
Target:  5'- -gCCGAGCcCGCUgaccggccgcgGcCAGCUCGUGGAu -3'
miRNA:   3'- gaGGCUCGuGCGG-----------UaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 165923 0.66 0.91
Target:  5'- uUCCGAGCugGUUugguGUCcGCUUGcCAGGu -3'
miRNA:   3'- gAGGCUCGugCGG----UAGuCGAGC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 135324 0.66 0.91
Target:  5'- -cCCGAGguCGgCGUCAGC-CGCGc- -3'
miRNA:   3'- gaGGCUCguGCgGUAGUCGaGCGUcu -5'
9018 3' -57.3 NC_002512.2 + 5439 0.66 0.91
Target:  5'- -aCCGAGacCACG-CGUCGGCgCGUAGAg -3'
miRNA:   3'- gaGGCUC--GUGCgGUAGUCGaGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 120278 0.66 0.91
Target:  5'- cCUCCGAGUucaGCGUgaugaaCGUCGGCUugUGCAGc -3'
miRNA:   3'- -GAGGCUCG---UGCG------GUAGUCGA--GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 82033 0.66 0.91
Target:  5'- gUCgGGGuCGCGCCggCGGCggUCGCGGc -3'
miRNA:   3'- gAGgCUC-GUGCGGuaGUCG--AGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 58940 0.66 0.91
Target:  5'- -aUCGAGgGCagaGUCAGCUCGUAGAc -3'
miRNA:   3'- gaGGCUCgUGcggUAGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 60847 0.66 0.904039
Target:  5'- -cCCGAGgagAUGCCGgcgCcGCUCGCGGAc -3'
miRNA:   3'- gaGGCUCg--UGCGGUa--GuCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 102337 0.66 0.904039
Target:  5'- gCUCCGguacgacaAGCGCGUCcUCGGCcUGCAGu -3'
miRNA:   3'- -GAGGC--------UCGUGCGGuAGUCGaGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 31022 0.66 0.904039
Target:  5'- -cCUGGGCaACGCCAUCGuGCaacaGCAGGc -3'
miRNA:   3'- gaGGCUCG-UGCGGUAGU-CGag--CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 155252 0.68 0.856336
Target:  5'- -cCCGucGCgGCGUCGaCGGCUCGCGGGa -3'
miRNA:   3'- gaGGCu-CG-UGCGGUaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 126038 0.68 0.856336
Target:  5'- gCUCCGGGUGCaCCGUCugguaccGCUUGCGGc -3'
miRNA:   3'- -GAGGCUCGUGcGGUAGu------CGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 72862 0.68 0.856336
Target:  5'- gCUCCGGGCcgcguCGCCGUUG--UCGCGGGg -3'
miRNA:   3'- -GAGGCUCGu----GCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 37290 0.68 0.856336
Target:  5'- -gCCGcGGCGCGCCG-CAGCa-GCGGGa -3'
miRNA:   3'- gaGGC-UCGUGCGGUaGUCGagCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.