miRNA display CGI


Results 81 - 96 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 3' -57.3 NC_002512.2 + 165923 0.66 0.91
Target:  5'- uUCCGAGCugGUUugguGUCcGCUUGcCAGGu -3'
miRNA:   3'- gAGGCUCGugCGG----UAGuCGAGC-GUCU- -5'
9018 3' -57.3 NC_002512.2 + 39809 0.66 0.915738
Target:  5'- -gCCGAGCcCGCUgaccggccgcgGcCAGCUCGUGGAu -3'
miRNA:   3'- gaGGCUCGuGCGG-----------UaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 154139 0.66 0.915738
Target:  5'- uCUCCGAcGCGCGCUcgGUCGccucccGUUCgGCGGAc -3'
miRNA:   3'- -GAGGCU-CGUGCGG--UAGU------CGAG-CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 102337 0.66 0.904039
Target:  5'- gCUCCGguacgacaAGCGCGUCcUCGGCcUGCAGu -3'
miRNA:   3'- -GAGGC--------UCGUGCGGuAGUCGaGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 31022 0.66 0.904039
Target:  5'- -cCUGGGCaACGCCAUCGuGCaacaGCAGGc -3'
miRNA:   3'- gaGGCUCG-UGCGGUAGU-CGag--CGUCU- -5'
9018 3' -57.3 NC_002512.2 + 24840 0.67 0.897858
Target:  5'- gUCCGGGCccGCgGCCgGUCGGCg-GCGGAc -3'
miRNA:   3'- gAGGCUCG--UG-CGG-UAGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 10760 0.68 0.856336
Target:  5'- ---aGAGCGCGUCGUCGGCcccgcCGCGGu -3'
miRNA:   3'- gaggCUCGUGCGGUAGUCGa----GCGUCu -5'
9018 3' -57.3 NC_002512.2 + 37290 0.68 0.856336
Target:  5'- -gCCGcGGCGCGCCG-CAGCa-GCGGGa -3'
miRNA:   3'- gaGGC-UCGUGCGGUaGUCGagCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 72862 0.68 0.856336
Target:  5'- gCUCCGGGCcgcguCGCCGUUG--UCGCGGGg -3'
miRNA:   3'- -GAGGCUCGu----GCGGUAGUcgAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 126038 0.68 0.856336
Target:  5'- gCUCCGGGUGCaCCGUCugguaccGCUUGCGGc -3'
miRNA:   3'- -GAGGCUCGUGcGGUAGu------CGAGCGUCu -5'
9018 3' -57.3 NC_002512.2 + 155252 0.68 0.856336
Target:  5'- -cCCGucGCgGCGUCGaCGGCUCGCGGGa -3'
miRNA:   3'- gaGGCu-CG-UGCGGUaGUCGAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 140680 0.67 0.870995
Target:  5'- aUgCGGGCcuGCGUCAUCGGCUacaGCGGc -3'
miRNA:   3'- gAgGCUCG--UGCGGUAGUCGAg--CGUCu -5'
9018 3' -57.3 NC_002512.2 + 83248 0.67 0.884848
Target:  5'- cCUCCucgucGC-CGCCAgCAGCUgGCGGAu -3'
miRNA:   3'- -GAGGcu---CGuGCGGUaGUCGAgCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 116768 0.67 0.884848
Target:  5'- uCUCCGAggagagGCACGaCGUCAGCgUCGCc-- -3'
miRNA:   3'- -GAGGCU------CGUGCgGUAGUCG-AGCGucu -5'
9018 3' -57.3 NC_002512.2 + 91993 0.67 0.89146
Target:  5'- gUCCGGGUcucccgcguCGCCGgcggCGGaCUCGCGGGc -3'
miRNA:   3'- gAGGCUCGu--------GCGGUa---GUC-GAGCGUCU- -5'
9018 3' -57.3 NC_002512.2 + 156550 0.66 0.915738
Target:  5'- uUCgGAGCGCGUgA-CGGCUgaGCGGAa -3'
miRNA:   3'- gAGgCUCGUGCGgUaGUCGAg-CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.