miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9018 5' -56.9 NC_002512.2 + 96120 0.66 0.958731
Target:  5'- uCGUCGUCGUcGUCGUcgUCGUcGUCGcGGg -3'
miRNA:   3'- -GCAGCAGCA-CGGCAa-GGCGuCAGC-CU- -5'
9018 5' -56.9 NC_002512.2 + 130455 0.66 0.958731
Target:  5'- ---gGUCGUGUCG-UCCGaCAGgagCGGGg -3'
miRNA:   3'- gcagCAGCACGGCaAGGC-GUCa--GCCU- -5'
9018 5' -56.9 NC_002512.2 + 68909 0.66 0.955145
Target:  5'- gGUCGUgcUGCUGgccgCCGCGGccUCGGGg -3'
miRNA:   3'- gCAGCAgcACGGCaa--GGCGUC--AGCCU- -5'
9018 5' -56.9 NC_002512.2 + 8799 0.66 0.955145
Target:  5'- cCGgagggCGUCccccacGCCGUUCCGCcGcCGGAg -3'
miRNA:   3'- -GCa----GCAGca----CGGCAAGGCGuCaGCCU- -5'
9018 5' -56.9 NC_002512.2 + 6365 0.66 0.955145
Target:  5'- gCGggCG-CGUGCCGUucUCCGCcguGGUCGu- -3'
miRNA:   3'- -GCa-GCaGCACGGCA--AGGCG---UCAGCcu -5'
9018 5' -56.9 NC_002512.2 + 152272 0.66 0.955145
Target:  5'- aGUCGUCGcucGUCGUUCCgGCGG-CGa- -3'
miRNA:   3'- gCAGCAGCa--CGGCAAGG-CGUCaGCcu -5'
9018 5' -56.9 NC_002512.2 + 219043 0.66 0.951353
Target:  5'- aCGUCGUCG-GCCGcggCGCGGggcuccccgCGGGc -3'
miRNA:   3'- -GCAGCAGCaCGGCaagGCGUCa--------GCCU- -5'
9018 5' -56.9 NC_002512.2 + 22384 0.66 0.951353
Target:  5'- uCGUCGUCGgucGCgGaUCCGgAGaCGGGc -3'
miRNA:   3'- -GCAGCAGCa--CGgCaAGGCgUCaGCCU- -5'
9018 5' -56.9 NC_002512.2 + 50244 0.66 0.951353
Target:  5'- gCGUCGcCGUcGCCGaUCCaGCuGUUGGu -3'
miRNA:   3'- -GCAGCaGCA-CGGCaAGG-CGuCAGCCu -5'
9018 5' -56.9 NC_002512.2 + 105416 0.66 0.947353
Target:  5'- cCGUUGUCGUggcGCCGgcUCagcaGCGGcUCGGGg -3'
miRNA:   3'- -GCAGCAGCA---CGGCa-AGg---CGUC-AGCCU- -5'
9018 5' -56.9 NC_002512.2 + 39282 0.66 0.947353
Target:  5'- -aUCGUCGaGCCGgcugaUCCGCAGgaaGGu -3'
miRNA:   3'- gcAGCAGCaCGGCa----AGGCGUCag-CCu -5'
9018 5' -56.9 NC_002512.2 + 34874 0.66 0.947353
Target:  5'- cCGUCGUCGccgccGCCGggaCCGCcGUCGc- -3'
miRNA:   3'- -GCAGCAGCa----CGGCaa-GGCGuCAGCcu -5'
9018 5' -56.9 NC_002512.2 + 96159 0.66 0.944851
Target:  5'- uCGUCGUCGcUGUCGgugucgaccgaccgUCCGguGgucCGGGa -3'
miRNA:   3'- -GCAGCAGC-ACGGCa-------------AGGCguCa--GCCU- -5'
9018 5' -56.9 NC_002512.2 + 166026 0.66 0.943141
Target:  5'- aCG-CGuUCGgcgGCCGUUCCGgGGUCa-- -3'
miRNA:   3'- -GCaGC-AGCa--CGGCAAGGCgUCAGccu -5'
9018 5' -56.9 NC_002512.2 + 3958 0.66 0.938716
Target:  5'- uCGUCGUCGUcGUCGUcgUCCccuCGGUCGa- -3'
miRNA:   3'- -GCAGCAGCA-CGGCA--AGGc--GUCAGCcu -5'
9018 5' -56.9 NC_002512.2 + 80626 0.67 0.934076
Target:  5'- uCGUCGUaccCGUccgGCCG-UCCGCGG-CGGc -3'
miRNA:   3'- -GCAGCA---GCA---CGGCaAGGCGUCaGCCu -5'
9018 5' -56.9 NC_002512.2 + 126833 0.67 0.934076
Target:  5'- cCGUCGUCGcGCuCGU--CGCGGUCGu- -3'
miRNA:   3'- -GCAGCAGCaCG-GCAagGCGUCAGCcu -5'
9018 5' -56.9 NC_002512.2 + 45309 0.67 0.934076
Target:  5'- cCGcCGcCcUGCCGgcCCGCGgGUCGGAg -3'
miRNA:   3'- -GCaGCaGcACGGCaaGGCGU-CAGCCU- -5'
9018 5' -56.9 NC_002512.2 + 108711 0.67 0.9336
Target:  5'- uCGUCGUCGUccgagaacgccucGCCcuGggCCGCGGcCGGc -3'
miRNA:   3'- -GCAGCAGCA-------------CGG--CaaGGCGUCaGCCu -5'
9018 5' -56.9 NC_002512.2 + 142268 0.67 0.924146
Target:  5'- gGUCGUCGU-CCGggCCGgGGaCGGc -3'
miRNA:   3'- gCAGCAGCAcGGCaaGGCgUCaGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.