miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9019 3' -60.1 NC_002512.2 + 221291 0.66 0.820668
Target:  5'- gGGGGgggaGGcCGGGGUcGGCGGGGAGc -3'
miRNA:   3'- -CUCCaggaCCaGUUCCA-CCGCCCCUU- -5'
9019 3' -60.1 NC_002512.2 + 189706 0.66 0.820668
Target:  5'- cGAcGUCCgggGGaugUCGGGGcGGUGGGGAGg -3'
miRNA:   3'- -CUcCAGGa--CC---AGUUCCaCCGCCCCUU- -5'
9019 3' -60.1 NC_002512.2 + 4634 0.66 0.795277
Target:  5'- -uGGUgaCCUGGac--GGUGGUGGGGAu -3'
miRNA:   3'- cuCCA--GGACCaguuCCACCGCCCCUu -5'
9019 3' -60.1 NC_002512.2 + 217718 0.66 0.786532
Target:  5'- cGAGGUCCgcuUCAGGGgcGGCaGGGAc -3'
miRNA:   3'- -CUCCAGGaccAGUUCCa-CCGcCCCUu -5'
9019 3' -60.1 NC_002512.2 + 213815 0.66 0.786532
Target:  5'- gGAGGguucCCUGGacgagagucUCGAGGcgcgGcGCGGGGAGa -3'
miRNA:   3'- -CUCCa---GGACC---------AGUUCCa---C-CGCCCCUU- -5'
9019 3' -60.1 NC_002512.2 + 146838 0.66 0.777658
Target:  5'- cGAGGUcgCCUGGccCAGGGUGcucgagcucgcGCGGGGc- -3'
miRNA:   3'- -CUCCA--GGACCa-GUUCCAC-----------CGCCCCuu -5'
9019 3' -60.1 NC_002512.2 + 160126 0.67 0.722172
Target:  5'- cAGGaCCUGGgCGAGGUGGCGauccGGGc- -3'
miRNA:   3'- cUCCaGGACCaGUUCCACCGC----CCCuu -5'
9019 3' -60.1 NC_002512.2 + 204907 0.78 0.206659
Target:  5'- -cGGUCCUGGUC-GGGUGaCGGGGAc -3'
miRNA:   3'- cuCCAGGACCAGuUCCACcGCCCCUu -5'
9019 3' -60.1 NC_002512.2 + 167253 1.06 0.002735
Target:  5'- aGAGGUCCUGGUCAAGGUGGCGGGGAAg -3'
miRNA:   3'- -CUCCAGGACCAGUUCCACCGCCCCUU- -5'
9019 3' -60.1 NC_002512.2 + 84170 0.73 0.411485
Target:  5'- gGAGGUCCcGGUCcAGGUucGGCGGGa-- -3'
miRNA:   3'- -CUCCAGGaCCAGuUCCA--CCGCCCcuu -5'
9019 3' -60.1 NC_002512.2 + 88552 0.68 0.683645
Target:  5'- aGGGUCgaGGUgGAGGUGGagauaGuGGGAGa -3'
miRNA:   3'- cUCCAGgaCCAgUUCCACCg----C-CCCUU- -5'
9019 3' -60.1 NC_002512.2 + 89190 0.67 0.722172
Target:  5'- cGAGGUCCaguUGGaggcguugUCgAAGGUGGCcGGGAu -3'
miRNA:   3'- -CUCCAGG---ACC--------AG-UUCCACCGcCCCUu -5'
9019 3' -60.1 NC_002512.2 + 108390 0.67 0.759557
Target:  5'- gGGGGgcgagCCcGGU--GGGUGGgGGGGAGg -3'
miRNA:   3'- -CUCCa----GGaCCAguUCCACCgCCCCUU- -5'
9019 3' -60.1 NC_002512.2 + 75027 0.67 0.760472
Target:  5'- cGAGGgCCggGGaCGAGGggacgcacgacggagGGCGGGGGAg -3'
miRNA:   3'- -CUCCaGGa-CCaGUUCCa--------------CCGCCCCUU- -5'
9019 3' -60.1 NC_002512.2 + 24696 0.66 0.777658
Target:  5'- gGGGGUCUc-GUCGAGGacgcgGGCGaGGGAGa -3'
miRNA:   3'- -CUCCAGGacCAGUUCCa----CCGC-CCCUU- -5'
9019 3' -60.1 NC_002512.2 + 86243 0.66 0.777658
Target:  5'- gGAGGaCCcgGGggaGAGGgccgaGGCGGGGAGg -3'
miRNA:   3'- -CUCCaGGa-CCag-UUCCa----CCGCCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.