miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
902 5' -53.2 NC_000899.1 + 38809 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 38943 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 39078 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 39213 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 39348 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 39483 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 39618 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 39753 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 39888 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 40022 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 40157 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 40292 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 40427 0.66 0.751288
Target:  5'- gCGCCCCCUgcc--GGCCGGaGAcaGACa -3'
miRNA:   3'- -GCGGGGGAauauaUCGGCUcCUa-CUG- -5'
902 5' -53.2 NC_000899.1 + 5821 0.67 0.673794
Target:  5'- aGCCagcgaCCgagcAUGUAGCUuAGGGUGACg -3'
miRNA:   3'- gCGGg----GGaa--UAUAUCGGcUCCUACUG- -5'
902 5' -53.2 NC_000899.1 + 8395 1.09 0.001155
Target:  5'- gCGCCCCCUUAUAUAGCCGAGGAUGACc -3'
miRNA:   3'- -GCGGGGGAAUAUAUCGGCUCCUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.