miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9020 3' -52.2 NC_002512.2 + 123666 0.66 0.995639
Target:  5'- ----cGCGcGCgCGcCGCCAUGGCCGc -3'
miRNA:   3'- guugaUGUuCGaGCuGUGGUACCGGC- -5'
9020 3' -52.2 NC_002512.2 + 186028 0.66 0.995639
Target:  5'- --cCUGCGucgcGCUCGGCAaCAcGGCCGu -3'
miRNA:   3'- guuGAUGUu---CGAGCUGUgGUaCCGGC- -5'
9020 3' -52.2 NC_002512.2 + 147746 0.66 0.995639
Target:  5'- uCAACcGCAAGCUgGACGCgCucaGCCGc -3'
miRNA:   3'- -GUUGaUGUUCGAgCUGUG-GuacCGGC- -5'
9020 3' -52.2 NC_002512.2 + 128816 0.66 0.995639
Target:  5'- -cGCggGCGGGCccUCGACGCCGgguucGCCGg -3'
miRNA:   3'- guUGa-UGUUCG--AGCUGUGGUac---CGGC- -5'
9020 3' -52.2 NC_002512.2 + 73794 0.66 0.995639
Target:  5'- uCAGCUGCGAGUccUCGACgaacugccggcGCCcgGcGUCGa -3'
miRNA:   3'- -GUUGAUGUUCG--AGCUG-----------UGGuaC-CGGC- -5'
9020 3' -52.2 NC_002512.2 + 3809 0.66 0.995639
Target:  5'- cCGAgaGCGAGCcgUCGACggaagaguagguGCCGaGGCCGa -3'
miRNA:   3'- -GUUgaUGUUCG--AGCUG------------UGGUaCCGGC- -5'
9020 3' -52.2 NC_002512.2 + 190196 0.66 0.995639
Target:  5'- cCGGCUGCAgaAGgUCGGCGgCGcGGUCGu -3'
miRNA:   3'- -GUUGAUGU--UCgAGCUGUgGUaCCGGC- -5'
9020 3' -52.2 NC_002512.2 + 105118 0.66 0.995368
Target:  5'- gGACUGCGcggucgucugGGC-CGACGacggcuccacgaaCAUGGCCGa -3'
miRNA:   3'- gUUGAUGU----------UCGaGCUGUg------------GUACCGGC- -5'
9020 3' -52.2 NC_002512.2 + 158962 0.66 0.994936
Target:  5'- gCAACggcgGCGAGCgguUCGGCGgCCAcGGCgGg -3'
miRNA:   3'- -GUUGa---UGUUCG---AGCUGU-GGUaCCGgC- -5'
9020 3' -52.2 NC_002512.2 + 122099 0.66 0.994936
Target:  5'- gGAC-GCGAGgUCGGCGCUgacGUcGGCCGc -3'
miRNA:   3'- gUUGaUGUUCgAGCUGUGG---UA-CCGGC- -5'
9020 3' -52.2 NC_002512.2 + 145185 0.66 0.994936
Target:  5'- -uACUGCGcgcgcacggAGUUCGAC-CCcgGGCUGc -3'
miRNA:   3'- guUGAUGU---------UCGAGCUGuGGuaCCGGC- -5'
9020 3' -52.2 NC_002512.2 + 51140 0.66 0.994471
Target:  5'- gCGACgUACAAgaggacGCUgGACGCCAucucgaaacugggccUGGCCa -3'
miRNA:   3'- -GUUG-AUGUU------CGAgCUGUGGU---------------ACCGGc -5'
9020 3' -52.2 NC_002512.2 + 1058 0.66 0.994143
Target:  5'- gGACUAUAAGacggCaGCACCGgcGGCCGg -3'
miRNA:   3'- gUUGAUGUUCga--GcUGUGGUa-CCGGC- -5'
9020 3' -52.2 NC_002512.2 + 143931 0.66 0.994143
Target:  5'- cCGACgACGAGCUucaggaugaCGACGuCCAgGGCCu -3'
miRNA:   3'- -GUUGaUGUUCGA---------GCUGU-GGUaCCGGc -5'
9020 3' -52.2 NC_002512.2 + 90465 0.66 0.994143
Target:  5'- cCAGCUGCGGGUcccCGAuCACCggGGCg- -3'
miRNA:   3'- -GUUGAUGUUCGa--GCU-GUGGuaCCGgc -5'
9020 3' -52.2 NC_002512.2 + 210635 0.66 0.994143
Target:  5'- gCAACUGCGAGUacgccucgcgucUCGGCuucuCCAUGGaCUc -3'
miRNA:   3'- -GUUGAUGUUCG------------AGCUGu---GGUACC-GGc -5'
9020 3' -52.2 NC_002512.2 + 210560 0.66 0.994143
Target:  5'- gGugUACGAGgUCGugGagaugaCGUGGUCGa -3'
miRNA:   3'- gUugAUGUUCgAGCugUg-----GUACCGGC- -5'
9020 3' -52.2 NC_002512.2 + 141551 0.66 0.994143
Target:  5'- gGACUACGGGg-UGACcucGCuCAUGGCCa -3'
miRNA:   3'- gUUGAUGUUCgaGCUG---UG-GUACCGGc -5'
9020 3' -52.2 NC_002512.2 + 101230 0.66 0.994143
Target:  5'- gCAGCaggAgGAGCUCGAUcCCccGGCCc -3'
miRNA:   3'- -GUUGa--UgUUCGAGCUGuGGuaCCGGc -5'
9020 3' -52.2 NC_002512.2 + 88970 0.66 0.994143
Target:  5'- --uCUGCGucugggucuccGGCuUCGugGCCGgggGGCCGa -3'
miRNA:   3'- guuGAUGU-----------UCG-AGCugUGGUa--CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.