miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9020 5' -59.1 NC_002512.2 + 1959 0.65 0.878187
Target:  5'- cCUCGuccGCCGGCGUcgGAGGcGGcgcguccgucuccGCCUCGGa -3'
miRNA:   3'- -GAGC---CGGUCGCG--UUCCuCC-------------UGGAGUC- -5'
9020 5' -59.1 NC_002512.2 + 91089 0.66 0.871953
Target:  5'- -gCGGUUcguGCGCGAGGAGGACg---- -3'
miRNA:   3'- gaGCCGGu--CGCGUUCCUCCUGgaguc -5'
9020 5' -59.1 NC_002512.2 + 106362 0.66 0.871953
Target:  5'- aCUCGGaguaCCAGaCGaCGAGGAaGGACCggGGg -3'
miRNA:   3'- -GAGCC----GGUC-GC-GUUCCU-CCUGGagUC- -5'
9020 5' -59.1 NC_002512.2 + 6321 0.66 0.871953
Target:  5'- -gUGGCCGcCGCccgcGGGGGGACCgggcgCGGg -3'
miRNA:   3'- gaGCCGGUcGCGu---UCCUCCUGGa----GUC- -5'
9020 5' -59.1 NC_002512.2 + 116887 0.66 0.871953
Target:  5'- -gCGGCUGGCgGCGGGGccGGGGcgggcuCCUCGGa -3'
miRNA:   3'- gaGCCGGUCG-CGUUCC--UCCU------GGAGUC- -5'
9020 5' -59.1 NC_002512.2 + 51197 0.66 0.864841
Target:  5'- -gCGGCC-GCGCu--GcGGGCCUCGGa -3'
miRNA:   3'- gaGCCGGuCGCGuucCuCCUGGAGUC- -5'
9020 5' -59.1 NC_002512.2 + 224350 0.66 0.864841
Target:  5'- -cCGcGCCGGgguCGCGGGcGGGaGACCUCGGu -3'
miRNA:   3'- gaGC-CGGUC---GCGUUC-CUC-CUGGAGUC- -5'
9020 5' -59.1 NC_002512.2 + 186654 0.66 0.864841
Target:  5'- aCUgGGcCCAGCuCcGGGAGGACgUCGu -3'
miRNA:   3'- -GAgCC-GGUCGcGuUCCUCCUGgAGUc -5'
9020 5' -59.1 NC_002512.2 + 29742 0.66 0.864841
Target:  5'- -gUGGCgGcGCGCGAGG-GGGCC-CGGc -3'
miRNA:   3'- gaGCCGgU-CGCGUUCCuCCUGGaGUC- -5'
9020 5' -59.1 NC_002512.2 + 27979 0.66 0.862669
Target:  5'- -gCGGCCgggcgagauuccGGCGCGGGGAgacGGAgaagccgccgccguCCUCGGa -3'
miRNA:   3'- gaGCCGG------------UCGCGUUCCU---CCU--------------GGAGUC- -5'
9020 5' -59.1 NC_002512.2 + 7271 0.66 0.857536
Target:  5'- gUCGGgauCgGGCGCGAGGccccgGGGGCCggaCAGg -3'
miRNA:   3'- gAGCC---GgUCGCGUUCC-----UCCUGGa--GUC- -5'
9020 5' -59.1 NC_002512.2 + 4106 0.66 0.857536
Target:  5'- -cCGGCCGGCGCA------GCCUCGGg -3'
miRNA:   3'- gaGCCGGUCGCGUuccuccUGGAGUC- -5'
9020 5' -59.1 NC_002512.2 + 2800 0.66 0.857536
Target:  5'- -cCGGCCGGCgGCcGGcGGGACC-CGGc -3'
miRNA:   3'- gaGCCGGUCG-CGuUCcUCCUGGaGUC- -5'
9020 5' -59.1 NC_002512.2 + 98326 0.66 0.855308
Target:  5'- gCUCggGGCCGGgGaCGGGGAGGggggcggccccuccGCCUCGu -3'
miRNA:   3'- -GAG--CCGGUCgC-GUUCCUCC--------------UGGAGUc -5'
9020 5' -59.1 NC_002512.2 + 212223 0.66 0.850044
Target:  5'- gUCGGCguGCGCGGGGAcGACauguUCGc -3'
miRNA:   3'- gAGCCGguCGCGUUCCUcCUGg---AGUc -5'
9020 5' -59.1 NC_002512.2 + 42301 0.66 0.850044
Target:  5'- -aCGGgaCAGagggaGCGGGGGGGAUCUCGa -3'
miRNA:   3'- gaGCCg-GUCg----CGUUCCUCCUGGAGUc -5'
9020 5' -59.1 NC_002512.2 + 110302 0.66 0.850044
Target:  5'- -aCuGCUGGCGCGAGG-GGACCcgcCGGg -3'
miRNA:   3'- gaGcCGGUCGCGUUCCuCCUGGa--GUC- -5'
9020 5' -59.1 NC_002512.2 + 223709 0.66 0.849285
Target:  5'- -cUGGCCGGCGacucgcaCGGGGAGGACgacCGGg -3'
miRNA:   3'- gaGCCGGUCGC-------GUUCCUCCUGga-GUC- -5'
9020 5' -59.1 NC_002512.2 + 127658 0.66 0.842371
Target:  5'- gUCGGaCAGaGCGccGAGGACCUCGu -3'
miRNA:   3'- gAGCCgGUCgCGUucCUCCUGGAGUc -5'
9020 5' -59.1 NC_002512.2 + 12111 0.66 0.842371
Target:  5'- -cCGGCCgcgaccccGGCGaCGGGGAcGGGCC-CGGg -3'
miRNA:   3'- gaGCCGG--------UCGC-GUUCCU-CCUGGaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.