miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9021 3' -58.1 NC_002512.2 + 151335 0.66 0.924146
Target:  5'- --cGCcCUCGCGGCccGG-CCGGcGCCa -3'
miRNA:   3'- acaUGaGAGCGCCGcuCUaGGCC-CGG- -5'
9021 3' -58.1 NC_002512.2 + 229460 0.66 0.924146
Target:  5'- --gGCUUU-GCGGCGucGGUCgCGGGCg -3'
miRNA:   3'- acaUGAGAgCGCCGCu-CUAG-GCCCGg -5'
9021 3' -58.1 NC_002512.2 + 226734 0.66 0.924146
Target:  5'- --gGCga-CGaCGGCGGGA-CCGGGCUc -3'
miRNA:   3'- acaUGagaGC-GCCGCUCUaGGCCCGG- -5'
9021 3' -58.1 NC_002512.2 + 25449 0.66 0.924146
Target:  5'- --gACUCUCGUGGaaCGAGAggaUCaGGcGCCg -3'
miRNA:   3'- acaUGAGAGCGCC--GCUCU---AGgCC-CGG- -5'
9021 3' -58.1 NC_002512.2 + 56 0.66 0.924146
Target:  5'- --gGCUUU-GCGGCGucGGUCgCGGGCg -3'
miRNA:   3'- acaUGAGAgCGCCGCu-CUAG-GCCCGg -5'
9021 3' -58.1 NC_002512.2 + 32104 0.66 0.924146
Target:  5'- gGUGuC-CUCGCGGuCGAGGUCgGGaucGUCg -3'
miRNA:   3'- aCAU-GaGAGCGCC-GCUCUAGgCC---CGG- -5'
9021 3' -58.1 NC_002512.2 + 128799 0.66 0.924146
Target:  5'- --gGgUCUC-CGGCGuGGUCCgcgggcGGGCCc -3'
miRNA:   3'- acaUgAGAGcGCCGCuCUAGG------CCCGG- -5'
9021 3' -58.1 NC_002512.2 + 94031 0.66 0.923627
Target:  5'- --cGCUCgguuUCGCGGCG-GAUCucuucggcgacgaCGGGCg -3'
miRNA:   3'- acaUGAG----AGCGCCGCuCUAG-------------GCCCGg -5'
9021 3' -58.1 NC_002512.2 + 79600 0.66 0.918856
Target:  5'- ---cCUCuUCGCgGGCGgcAGcgCCGGGUCg -3'
miRNA:   3'- acauGAG-AGCG-CCGC--UCuaGGCCCGG- -5'
9021 3' -58.1 NC_002512.2 + 131099 0.66 0.918856
Target:  5'- gGUAC-CUggaCGUGGUGcg--CCGGGCCa -3'
miRNA:   3'- aCAUGaGA---GCGCCGCucuaGGCCCGG- -5'
9021 3' -58.1 NC_002512.2 + 134850 0.66 0.918856
Target:  5'- gGUGCUCccCGC-GCGAcGUCuCGGGCg -3'
miRNA:   3'- aCAUGAGa-GCGcCGCUcUAG-GCCCGg -5'
9021 3' -58.1 NC_002512.2 + 94702 0.66 0.918856
Target:  5'- cGUGCgacagCUCGCGGUGcg--CgGGGCg -3'
miRNA:   3'- aCAUGa----GAGCGCCGCucuaGgCCCGg -5'
9021 3' -58.1 NC_002512.2 + 110193 0.66 0.918856
Target:  5'- --cGCuUCUCGCGcGCaGGGGUgCGGGUg -3'
miRNA:   3'- acaUG-AGAGCGC-CG-CUCUAgGCCCGg -5'
9021 3' -58.1 NC_002512.2 + 156471 0.66 0.918856
Target:  5'- --gACUCggggGCGGCGGGcUCggCGGGCUg -3'
miRNA:   3'- acaUGAGag--CGCCGCUCuAG--GCCCGG- -5'
9021 3' -58.1 NC_002512.2 + 22962 0.66 0.91335
Target:  5'- gUGUGCcagccguucaUCaccCGCGGCGGGAcgCGGGCg -3'
miRNA:   3'- -ACAUG----------AGa--GCGCCGCUCUagGCCCGg -5'
9021 3' -58.1 NC_002512.2 + 222535 0.66 0.91335
Target:  5'- --cGCcgUCGCGGUGGG--CCGGGCUa -3'
miRNA:   3'- acaUGagAGCGCCGCUCuaGGCCCGG- -5'
9021 3' -58.1 NC_002512.2 + 189075 0.66 0.91335
Target:  5'- --cGCUCUCGaCGGCGAGucUCCGcgacGUCc -3'
miRNA:   3'- acaUGAGAGC-GCCGCUCu-AGGCc---CGG- -5'
9021 3' -58.1 NC_002512.2 + 70239 0.66 0.91335
Target:  5'- gGUGCcggcgCUCGUcuGCGAGaAUCgCGGGUCa -3'
miRNA:   3'- aCAUGa----GAGCGc-CGCUC-UAG-GCCCGG- -5'
9021 3' -58.1 NC_002512.2 + 123482 0.66 0.907629
Target:  5'- gUGUGCgUCUCGCGGguccaGGGGgugCUcGGCCc -3'
miRNA:   3'- -ACAUG-AGAGCGCCg----CUCUa--GGcCCGG- -5'
9021 3' -58.1 NC_002512.2 + 49203 0.66 0.907629
Target:  5'- aGUACaacCggGCGGCguguGAGAUCUucgGGGCCa -3'
miRNA:   3'- aCAUGa--GagCGCCG----CUCUAGG---CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.