miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9021 5' -53.1 NC_002512.2 + 166035 0.66 0.992691
Target:  5'- gCGGCCguucCGGGGucaucaAGGUCuucUGCGCGGGc -3'
miRNA:   3'- aGUUGGa---GCUCC------UCUAGu--ACGCGCUC- -5'
9021 5' -53.1 NC_002512.2 + 114289 0.66 0.992691
Target:  5'- gCGAucUCUCGAGuGAGGU--UGUGCGAGu -3'
miRNA:   3'- aGUU--GGAGCUC-CUCUAguACGCGCUC- -5'
9021 5' -53.1 NC_002512.2 + 216706 0.66 0.992691
Target:  5'- gUCAGguCCUCGAGcugcagguGGAUCAUgGCGCGcAGg -3'
miRNA:   3'- -AGUU--GGAGCUCc-------UCUAGUA-CGCGC-UC- -5'
9021 5' -53.1 NC_002512.2 + 117112 0.66 0.992691
Target:  5'- aUCAACCUCaAGGccacCGUGuCGCGGGa -3'
miRNA:   3'- -AGUUGGAGcUCCucuaGUAC-GCGCUC- -5'
9021 5' -53.1 NC_002512.2 + 152401 0.66 0.992691
Target:  5'- uUCGACg-CGGGcGAG--CGUGCGCGGGa -3'
miRNA:   3'- -AGUUGgaGCUC-CUCuaGUACGCGCUC- -5'
9021 5' -53.1 NC_002512.2 + 221591 0.66 0.991644
Target:  5'- gUCGACC-CGgaGGGGGGUCGgugGacgGCGAGg -3'
miRNA:   3'- -AGUUGGaGC--UCCUCUAGUa--Cg--CGCUC- -5'
9021 5' -53.1 NC_002512.2 + 89679 0.66 0.991644
Target:  5'- --uGCCUCGGGGAGAgcggCAgGC-CGAa -3'
miRNA:   3'- aguUGGAGCUCCUCUa---GUaCGcGCUc -5'
9021 5' -53.1 NC_002512.2 + 156510 0.66 0.991644
Target:  5'- gCGGCCUgGGcggcggggcgcGGGGGUCcgGCgGCGGGa -3'
miRNA:   3'- aGUUGGAgCU-----------CCUCUAGuaCG-CGCUC- -5'
9021 5' -53.1 NC_002512.2 + 191278 0.66 0.991644
Target:  5'- gCGGCgaCGGGGAGggCGgcgGgGCGGGg -3'
miRNA:   3'- aGUUGgaGCUCCUCuaGUa--CgCGCUC- -5'
9021 5' -53.1 NC_002512.2 + 204857 0.66 0.991644
Target:  5'- gUCGGuCCUCGuGGAGGUC---CGCGAc -3'
miRNA:   3'- -AGUU-GGAGCuCCUCUAGuacGCGCUc -5'
9021 5' -53.1 NC_002512.2 + 55863 0.66 0.990483
Target:  5'- -gGACUUCGAGGcGGA-CAUGUacGCGGGc -3'
miRNA:   3'- agUUGGAGCUCC-UCUaGUACG--CGCUC- -5'
9021 5' -53.1 NC_002512.2 + 38007 0.66 0.990483
Target:  5'- aCGGCCgcUCGGGGAc----UGCGCGAGa -3'
miRNA:   3'- aGUUGG--AGCUCCUcuaguACGCGCUC- -5'
9021 5' -53.1 NC_002512.2 + 88994 0.66 0.989198
Target:  5'- gUCGACCcggagcgCGGGGAcGUCGggcaGCGCGAu -3'
miRNA:   3'- -AGUUGGa------GCUCCUcUAGUa---CGCGCUc -5'
9021 5' -53.1 NC_002512.2 + 99677 0.66 0.989198
Target:  5'- --cGCCgcCGAGGAccacuggccGAUCAUGCGaCGGGc -3'
miRNA:   3'- aguUGGa-GCUCCU---------CUAGUACGC-GCUC- -5'
9021 5' -53.1 NC_002512.2 + 51524 0.66 0.989198
Target:  5'- aUCAcGCCgUCgGAGGAGAUCcgGagacuGCGGGg -3'
miRNA:   3'- -AGU-UGG-AG-CUCCUCUAGuaCg----CGCUC- -5'
9021 5' -53.1 NC_002512.2 + 149414 0.66 0.989198
Target:  5'- -gGGCCgCGAGGGGAccgCGgcgggggcggGCGCGGGg -3'
miRNA:   3'- agUUGGaGCUCCUCUa--GUa---------CGCGCUC- -5'
9021 5' -53.1 NC_002512.2 + 219223 0.66 0.989198
Target:  5'- cCGGCCUcggCGAGGucgGGAUCGUGCuCGGc -3'
miRNA:   3'- aGUUGGA---GCUCC---UCUAGUACGcGCUc -5'
9021 5' -53.1 NC_002512.2 + 213507 0.66 0.989198
Target:  5'- gUCGACUUCGAGGGcGUCGUccGgGuCGGGg -3'
miRNA:   3'- -AGUUGGAGCUCCUcUAGUA--CgC-GCUC- -5'
9021 5' -53.1 NC_002512.2 + 89329 0.66 0.987783
Target:  5'- aCGACCuUCGAGGuAGAggacCAgaacgGCGuCGAGg -3'
miRNA:   3'- aGUUGG-AGCUCC-UCUa---GUa----CGC-GCUC- -5'
9021 5' -53.1 NC_002512.2 + 131020 0.66 0.987783
Target:  5'- uUCGACgcgCUCGAGGGcGUCGggGCcGCGGGg -3'
miRNA:   3'- -AGUUG---GAGCUCCUcUAGUa-CG-CGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.